Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS25210 and BPHYT_RS25215 are separated by 73 nucleotidesBPHYT_RS25215 and BPHYT_RS25220 are separated by 33 nucleotidesBPHYT_RS25220 and BPHYT_RS25225 are separated by 136 nucleotidesBPHYT_RS25225 and BPHYT_RS25230 are separated by 96 nucleotides BPHYT_RS25210: BPHYT_RS25210 - drug:proton antiporter, at 1,229,942 to 1,230,718 _RS25210 BPHYT_RS25215: BPHYT_RS25215 - (Fe-S)-binding protein, at 1,230,792 to 1,232,105 _RS25215 BPHYT_RS25220: BPHYT_RS25220 - ferredoxin oxidoreductase, at 1,232,139 to 1,233,386 _RS25220 BPHYT_RS25225: BPHYT_RS25225 - glycine/betaine ABC transporter substrate-binding protein, at 1,233,523 to 1,234,380 _RS25225 BPHYT_RS25230: BPHYT_RS25230 - formyltetrahydrofolate deformylase, at 1,234,477 to 1,235,352 _RS25230
Group Condition BPHYT_RS25210 BPHYT_RS25215 BPHYT_RS25220 BPHYT_RS25225 BPHYT_RS25230
nitrogen source Carnitine Hydrochloride (N) -3.5 N.D. -5.0 N.D. -0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.1 N.D. -2.9 N.D. +0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.5 N.D. -1.4 N.D. -0.8
phage 36hr PHYTO7 MOI 0.1 -1.1 N.D. -1.0 N.D. -0.6
phage 24hr PHYTO4 MOI 10 -2.1 N.D. -0.2 N.D. +0.1
phage 24hr PHYTO10 MOI 10 +0.4 N.D. -1.9 N.D. -0.6
carbon source Suberic (C) -2.2 N.D. +0.5 N.D. -0.2
carbon source L-Fucose (C) -1.8 N.D. -0.2 N.D. +0.2
phage 24hr PHYTO MOI 0.1 +1.0 N.D. -1.5 N.D. -1.2
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -1.8 N.D. -0.2 N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 N.D. -1.0 N.D. +0.7
phage 24hr PHYTO6 MOI 10 +0.5 N.D. -1.7 N.D. -0.2
nophagecontrol 36hr Phyto Lib Only +0.7 N.D. -2.1 N.D. +0.0
phage 36hr PHYTO8 MOI 10 +0.7 N.D. -1.2 N.D. -0.8
phage 24hr PHYTO11 MOI 1 -0.6 N.D. -1.3 N.D. +0.6
phage 36hr PHYTO4 MOI 1 +0.5 N.D. -1.6 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.8 N.D. +1.2 N.D. -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -1.0 N.D. -0.6 N.D. +0.7
phage 24hr PHYTO7 MOI 1 +0.8 N.D. -0.6 N.D. -1.0
phage 24hr PHYTO3 MOI 10 +0.9 N.D. -0.7 N.D. -0.8
phage 24hr PHYTO2 MOI 0.1 +1.1 N.D. -1.3 N.D. -0.1
nophagecontrol 24hr Phyto Lib Only +0.9 N.D. -1.4 N.D. +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.2 N.D. -1.7 N.D. +0.4
phage 36hr PHYTO6 MOI 0.1 +1.4 N.D. -1.3 N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.0 N.D. -1.0 N.D. +0.4
phage 36hr PHYTO2 MOI 1 +1.8 N.D. -0.9 N.D. -0.3
nophagecontrol 24hr Phyto Lib Only +1.5 N.D. -1.0 N.D. +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.6 N.D. +1.0 N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.3 N.D. +0.6 N.D. +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.8 N.D. +0.6 N.D. +0.9
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