Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS25185 and BPHYT_RS25190 are separated by 53 nucleotidesBPHYT_RS25190 and BPHYT_RS25195 are separated by 49 nucleotidesBPHYT_RS25195 and BPHYT_RS25200 are separated by 2 nucleotidesBPHYT_RS25200 and BPHYT_RS25205 are separated by 4 nucleotides BPHYT_RS25185: BPHYT_RS25185 - peptidase M19, at 1,223,169 to 1,224,140 _RS25185 BPHYT_RS25190: BPHYT_RS25190 - 4-vinyl reductase, at 1,224,194 to 1,224,730 _RS25190 BPHYT_RS25195: BPHYT_RS25195 - N-methylproline demethylase, at 1,224,780 to 1,226,843 _RS25195 BPHYT_RS25200: BPHYT_RS25200 - (Fe-S)-binding protein, at 1,226,846 to 1,228,759 _RS25200 BPHYT_RS25205: BPHYT_RS25205 - electron transfer flavoprotein subunit alpha, at 1,228,764 to 1,229,945 _RS25205
Group Condition BPHYT_RS25185 BPHYT_RS25190 BPHYT_RS25195 BPHYT_RS25200 BPHYT_RS25205
nitrogen source Carnitine Hydrochloride (N) N.D. N.D. N.D. -2.3 -3.9
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. N.D. N.D. -1.8 -3.4
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days N.D. N.D. N.D. -1.4 -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.3 -0.9
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.0 -1.2
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.9 -0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. N.D. N.D. -1.2 -0.4
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. N.D. N.D. -0.5 -0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. N.D. N.D. -0.5 -0.8
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.6 -0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. N.D. -0.3 -0.8
carbon source Sebacic (C) N.D. N.D. N.D. -0.7 -0.5
phage 36hr PHYTO8 MOI 0.1 N.D. N.D. N.D. -0.7 -0.4
nitrogen source L-Proline (N) N.D. N.D. N.D. -0.4 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.6 -0.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.5 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.4 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.3 -0.6
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.5 -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. N.D. -0.1 -0.8
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 N.D. N.D. N.D. -0.6 -0.3
carbon source D-Glucose (C) N.D. N.D. N.D. -0.6 -0.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.5 -0.4
nitrogen source Uridine (N) N.D. N.D. N.D. -0.3 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -1.0 +0.4
phage 24hr PHYTO1 MOI 10 N.D. N.D. N.D. +0.6 -0.3
phage 24hr PHYTO3 MOI 10 N.D. N.D. N.D. +0.8 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +0.4 +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +0.4 +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +0.5 +0.9
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