Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS25145	BPHYT_RS25150	BPHYT_RS25155	BPHYT_RS25160	BPHYT_RS25165
motility	inner cut, LB soft agar motility assay	-0.5	+0.1	-0.5	-1.0	-0.2
motility	outer cut, LB soft agar motility assay	-0.5	-0.5	+0.1	-0.1	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	-0.4	+0.6	-0.3	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	+0.1	+0.2	-1.8	+0.1
phage	36hr PHYTO9 MOI 0.1	+0.4	-0.4	-0.1	-0.1	-1.4
carbon source	adipate (C)	+0.4	-0.9	+0.1	-0.7	-0.2
phage	P. phyto PHYTO2 MOI 1	+0.3	-0.4	-0.0	-1.7	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	-0.2	-0.1	-0.6	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.4	+0.5	-1.0	+0.0
nophagecontrol	36hr Phyto Lib only	+0.5	+0.3	+0.1	-0.3	-1.6
phage	24hr PHYTO6 MOI 1	-0.8	-0.5	+0.2	-0.5	+0.8
phage	36hr PHYTO1 MOI 10	+0.2	+0.1	+0.4	+0.1	-1.5
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-1.1	+0.3	-0.4	+0.1	+0.4
nitrogen source	NAG (N)	+0.6	-0.3	+0.2	-0.7	-0.5
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.6	-0.6	+0.1	+0.2	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.2	+0.9	+0.3	-1.2
phage	36hr PHYTO2 MOI 1	-0.4	+0.0	+0.7	-0.8	+0.6
phage	24hr PHYTO10 MOI 1	-0.2	+0.3	+0.2	-0.7	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	-0.5	+0.2	+0.0	+1.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	+0.4	+0.2	+0.0	+0.9
phage	36hr PHYTO4 MOI 1	+0.1	-0.3	+0.5	-0.6	+1.0
phage	24hr PHYTO9 MOI 0.1	+0.6	+0.2	+0.2	-0.7	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.5	-0.5	+0.1	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	+0.5	+0.1	-0.7	+1.1
carbon source	Suberic (C)	+0.3	-0.1	+0.6	+0.7	+0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.6	-0.4	+0.4	+1.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.6	-0.5	+0.3	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.1	+0.1	+0.1	+0.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	+1.4	+0.1	-0.1	+0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.8	+0.3	-0.4	+0.6	+1.6