Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS25090 and BPHYT_RS25095 are separated by 580 nucleotidesBPHYT_RS25095 and BPHYT_RS25100 are separated by 300 nucleotidesBPHYT_RS25100 and BPHYT_RS25105 are separated by 111 nucleotidesBPHYT_RS25105 and BPHYT_RS25110 are separated by 28 nucleotides BPHYT_RS25090: BPHYT_RS25090 - hypothetical protein, at 1,201,082 to 1,201,603 _RS25090 BPHYT_RS25095: BPHYT_RS25095 - AraC family transcriptional regulator, at 1,202,184 to 1,203,266 _RS25095 BPHYT_RS25100: BPHYT_RS25100 - serine dehydratase, at 1,203,567 to 1,204,961 _RS25100 BPHYT_RS25105: BPHYT_RS25105 - sarcosine oxidase subunit beta, at 1,205,073 to 1,206,317 _RS25105 BPHYT_RS25110: BPHYT_RS25110 - sarcosine oxidase subunit delta, at 1,206,346 to 1,206,684 _RS25110
Group Condition BPHYT_RS25090 BPHYT_RS25095 BPHYT_RS25100 BPHYT_RS25105 BPHYT_RS25110
nitrogen source Carnitine Hydrochloride (N) N.D. -5.4 -1.6 -2.4 -5.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. -3.1 -0.5 -0.6 +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -2.0 -0.5 -0.1 -0.9
phage 24hr PHYTO7 MOI 1 N.D. -3.5 +0.3 -0.0 -0.0
phage P. phyto PHYTO2 MOI 1 N.D. +0.3 +0.2 -0.0 -3.6
phage 24hr PHYTO4 MOI 0.1 N.D. -1.6 +0.0 -0.6 -0.8
phage 36hr PHYTO11 MOI 0.1 N.D. -1.3 -0.8 -0.0 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -1.3 -0.7 +0.4 -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.6 -0.7 +0.2 -0.1
phage 36hr PHYTO6 MOI 0.1 N.D. +0.3 -0.6 -0.4 -1.1
phage 24hr PHYTO11 MOI 1 N.D. -2.4 +0.3 +0.2 +0.3
carbon source Protocatechuic Acid (C) N.D. -1.4 +0.4 +0.6 -0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. -1.5 +0.2 -0.4 +0.9
phage 24hr PHYTO2 MOI 0.1 N.D. +1.0 -0.3 -0.3 -1.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +1.3 -1.0 -0.3 -0.4
phage 24hr PHYTO1 MOI 10 N.D. +1.0 +0.1 -0.2 -1.2
phage 36hr PHYTO1 MOI 10 N.D. +1.7 -0.2 -0.3 -1.4
phage 36hr PHYTO2 MOI 1 N.D. -2.2 +0.7 +0.2 +1.1
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. -0.1 -1.3 +0.2 +1.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. -1.3 +0.3 +0.3 +0.6
phage 24hr PHYTO3 MOI 0.1 N.D. +1.6 +0.1 -0.4 -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. -0.6 -0.5 -0.6 +2.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. -0.4 -1.0 -0.6 +2.4
phage 36hr PHYTO4 MOI 1 N.D. +1.4 +0.5 -0.3 -1.0
phage 36hr PHYTO11 MOI 1 N.D. +1.7 -0.1 -0.5 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. -0.2 -0.5 -0.6 +2.6
phage 36hr PHYTO7 MOI 0.1 N.D. +1.0 +0.4 -0.5 +0.6
carbon source Malonic (C) N.D. +0.7 -0.7 -0.2 +1.8
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +2.0 -0.3 +0.2 -0.2
carbon source Sebacic (C) N.D. +1.4 +0.3 +0.4 +0.5
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