Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS25060	BPHYT_RS25065	BPHYT_RS25070	BPHYT_RS25075	BPHYT_RS25080
phage	24hr PHYTO8 MOI 1	-0.2	-1.1	-2.7	-0.4	-1.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.3	+0.3	-1.4	-4.3
nitrogen source	L-Lysine (N)	-0.5	-1.7	-3.6	+1.1	-0.1
nitrogen source	Carnitine Hydrochloride (N)	+0.4	-2.3	-3.4	+0.6	+1.2
phage	36hr PHYTO1 MOI 10	-0.8	-1.3	-0.0	+0.4	-1.2
phage	36hr PHYTO1 MOI 1	-0.7	-0.1	-0.7	+0.4	-1.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	+0.8	-2.0	-0.1	-0.8
phage	24hr PHYTO7 MOI 10	+0.1	-2.1	-0.6	-0.3	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.0	-0.7	-1.6	-0.5	+0.7
supernatant control	Vogels_fungal_media; pH 5.5	+0.6	-2.0	+0.0	-0.8	+0.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.4	+0.8	+0.2	-0.7	-1.7
phage	36hr PHYTO8 MOI 10	-0.4	+0.4	+0.7	-1.0	-1.4
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.5	-1.5	+1.0	+0.2	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.4	-2.2	+0.5	+0.7
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.7	+0.7	-1.1	+0.5	-0.5
carbon source	Suberic (C)	+0.1	+1.2	-0.1	-0.7	-1.4
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+1.0	+0.2	-0.3	+0.3	-1.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.4	-1.6	-0.4	+0.6	+0.5
phage	36hr PHYTO10 MOI 10	+0.2	-0.7	+0.9	+0.5	-1.3
vitamin	No vitamins t1	-0.4	+0.5	-1.3	+0.1	+1.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.5	+0.7	-1.7	+0.7	+0.9
vitamin	With vitamins t1	+0.0	-1.3	-0.2	+1.2	+0.7
motility	outer cut, LB soft agar motility assay	-0.3	-1.3	+1.3	+0.6	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-1.3	+0.5	-0.6	+2.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.1	-0.9	+0.9	+1.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8	+0.4	-1.2	+1.6	-0.5
phage	24hr PHYTO6 MOI 0.1	-1.1	+0.1	+0.8	+0.7	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	-0.5	-0.6	+1.8	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.9	+1.0	-0.5	+1.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.2	+1.6	+0.6	+0.9