Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS24995	BPHYT_RS25000	BPHYT_RS25005	BPHYT_RS25010	BPHYT_RS25015
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.7	-1.6	-2.3	+0.4	-0.4
phage	24hr PHYTO7 MOI 10	-0.1	-0.8	-1.7	+0.1	-0.6
vitamin	No vitamins t2	-0.3	-0.3	-1.5	-0.1	-0.6
nitrogen source	L-Isoleucine (N)	-0.1	+1.1	-2.5	-0.0	-0.8
phage	36hr PHYTO11 MOI 0.1	-0.1	+0.7	-2.0	-0.7	-0.3
nitrogen source	L-Citrulline (N)	-0.3	-0.1	-1.9	+0.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	+0.4	-1.2	-0.4	-0.7
phage	36hr PHYTO1 MOI 1	-0.2	+0.5	-0.1	-0.4	-2.0
phage	36hr PHYTO11 MOI 1	-0.2	+0.3	-1.1	-0.6	-0.6
phage	P. phyto PHYTO2 MOI 0.1	-1.9	+0.5	-0.0	+0.1	-0.7
nophagecontrol	36hr Phyto Lib only	-0.6	+0.5	-1.3	+0.0	-0.5
phage	24hr PHYTO2 MOI 0.1	-0.7	+0.5	-1.0	-0.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	+0.3	-2.0	+0.1	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.9	+0.4	-1.6	+0.4	+0.6
phage	24hr PHYTO7 MOI 1	-0.4	+0.6	+0.6	-0.1	-1.8
phage	24hr PHYTO4 MOI 10	-1.1	-0.2	+0.8	-0.4	-0.2
phage	P. phyto PHYTO2 MOI 1	-2.2	+0.9	+0.9	-0.5	-0.2
phage	PHYTO3 MOI 0.1	-0.8	+0.3	+0.7	-0.6	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+0.7	-1.2	+0.3	-0.5
vitamin	No vitamins t1	-0.5	+1.2	-1.2	-0.0	-0.1
phage	24hr PHYTO3 MOI 10	-0.3	-0.3	+1.4	-1.2	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.6	-0.9	+1.3	+0.0	+0.1
phage	P. phyto corn MOI 1	-0.7	+0.4	+1.0	-0.1	-0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.1	+1.8	-0.4	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.4	+1.4	-0.7	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.4	-0.6	+1.3	+0.4	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-0.5	+1.5	-0.2	+0.5
carbon source	Suberic (C)	+0.4	+0.5	-0.6	+0.7	+0.5
carbon source	Sebacic (C)	+0.7	+0.3	-0.8	+0.9	+0.8
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.9	+0.3	+1.6	-0.4	-0.3