Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS24765 and BPHYT_RS24770 are separated by 274 nucleotidesBPHYT_RS24770 and BPHYT_RS24775 are separated by 124 nucleotidesBPHYT_RS24775 and BPHYT_RS24780 are separated by 240 nucleotidesBPHYT_RS24780 and BPHYT_RS24785 are separated by 65 nucleotides BPHYT_RS24765: BPHYT_RS24765 - FAD-dependent oxidoreductase, at 1,120,286 to 1,122,781 _RS24765 BPHYT_RS24770: BPHYT_RS24770 - DeoR family transcriptional regulator, at 1,123,056 to 1,123,838 _RS24770 BPHYT_RS24775: BPHYT_RS24775 - helicase, at 1,123,963 to 1,127,430 _RS24775 BPHYT_RS24780: BPHYT_RS24780 - hypothetical protein, at 1,127,671 to 1,127,919 _RS24780 BPHYT_RS24785: BPHYT_RS24785 - peptidase M23, at 1,127,985 to 1,128,788 _RS24785
Group Condition BPHYT_RS24765 BPHYT_RS24770 BPHYT_RS24775 BPHYT_RS24780 BPHYT_RS24785
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.2 -2.7 -0.1 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.4 -0.7 -0.4 N.D. N.D.
supernatant control Vogels_fungal_media 0.1X -0.4 -0.9 -0.3 N.D. N.D.
phage 24hr PHYTO3 MOI 10 -0.1 -1.4 +0.4 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.7 -0.5 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 -0.8 -0.3 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.6 +0.5 -0.5 N.D. N.D.
phage 24hr PHYTO3 MOI 1 -0.2 +0.5 -0.7 N.D. N.D.
nitrogen source L-Phenylalanine (N) -0.0 -0.7 +0.5 N.D. N.D.
nitrogen source L-Alanine (N) +0.2 -0.9 +0.5 N.D. N.D.
phage 24hr PHYTO10 MOI 10 -0.4 +0.8 -0.5 N.D. N.D.
nitrogen source L-Lysine (N) +0.2 -1.0 +0.8 N.D. N.D.
phage 36hr PHYTO4 MOI 1 -0.1 +0.7 -0.6 N.D. N.D.
phage 36hr PHYTO8 MOI 10 -0.1 +0.8 -0.4 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 -0.5 +0.3 N.D. N.D.
nitrogen source L-Isoleucine (N) -0.2 -0.1 +0.9 N.D. N.D.
phage 36hr PHYTO11 MOI 1 +0.2 +0.7 -0.4 N.D. N.D.
phage P. phyto PHYTO2 MOI 1 -0.5 +0.4 +0.7 N.D. N.D.
phage 36hr PHYTO10 MOI 10 -0.4 +0.9 +0.2 N.D. N.D.
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +0.2 +1.0 -0.5 N.D. N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.3 +0.5 +0.7 N.D. N.D.
nophagecontrol 24hr Phyto Lib Only -0.2 +1.1 +0.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +1.1 -0.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.3 +0.9 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.8 +0.0 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +0.5 +0.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.4 +0.5 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 +1.2 +0.4 N.D. N.D.
phage P. phyto PHYTO2 MOI 1 +0.5 +1.1 +0.4 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +2.6 +0.0 N.D. N.D.
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