Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS24680	BPHYT_RS24685	BPHYT_RS24690	BPHYT_RS24695	BPHYT_RS24700
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.7	-0.7	-0.4	N.D.	-0.3
carbon source	D-Glucose (C)	-0.9	-0.8	+0.2	N.D.	-0.1
nitrogen source	L-Phenylalanine (N)	-1.0	-0.4	-0.1	N.D.	+0.1
carbon source	D-Glucose 20 mM (C)	-0.6	-0.9	-0.2	N.D.	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.8	+0.2	-0.6	N.D.	-0.1
nitrogen source	NAG (N)	-0.5	-1.2	+0.2	N.D.	+0.2
nutrient	Min media with glucose	-0.5	-0.8	+0.3	N.D.	-0.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.4	-0.9	-0.2	N.D.	+0.4
phage	24hr PHYTO3 MOI 10	-0.7	+0.2	-0.7	N.D.	+0.1
nitrogen source	L-Citrulline (N)	-0.4	-1.1	+0.3	N.D.	+0.3
carbon source	D-Glucose 20 mM (C)	-0.6	-0.7	+0.2	N.D.	+0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.5	-0.9	+0.2	N.D.	+0.4
nitrogen source	L-Lysine (N)	-1.1	-0.4	+1.3	N.D.	-0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.0	+0.2	+0.2	N.D.	+0.3
phage	24hr PHYTO7 MOI 1	+0.7	+0.3	-0.9	N.D.	-0.0
carbon source	L-Glutamine (C)	-0.5	+0.1	+0.9	N.D.	-0.2
phage	24hr PHYTO9 MOI 10	+0.9	+0.3	-0.6	N.D.	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	+0.2	+0.8	N.D.	+0.4
carbon source	D-Glucose (C)	+1.3	-0.4	-0.1	N.D.	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	+0.2	+1.4	N.D.	-0.1
motility	inner cut, LB soft agar motility assay	-0.6	+0.4	+1.2	N.D.	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.3	+0.8	N.D.	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6	+0.2	+0.9	N.D.	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.2	+1.1	N.D.	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.3	+0.8	N.D.	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.5	+0.8	N.D.	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+0.4	+0.9	N.D.	+0.3
motility	outer cut, LB soft agar motility assay	+0.2	+0.1	+1.4	N.D.	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	+0.7	+1.2	N.D.	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.5	+2.0	N.D.	+0.2