Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS24495 and BPHYT_RS24500 overlap by 4 nucleotidesBPHYT_RS24500 and BPHYT_RS24505 overlap by 4 nucleotidesBPHYT_RS24505 and BPHYT_RS24510 are separated by 54 nucleotidesBPHYT_RS24510 and BPHYT_RS24515 are separated by 267 nucleotides BPHYT_RS24495: BPHYT_RS24495 - transcriptional regulator, at 1,064,076 to 1,064,747 _RS24495 BPHYT_RS24500: BPHYT_RS24500 - histidine kinase, at 1,064,744 to 1,066,144 _RS24500 BPHYT_RS24505: BPHYT_RS24505 - glyoxalase, at 1,066,141 to 1,066,566 _RS24505 BPHYT_RS24510: BPHYT_RS24510 - alkylphosphonate utilization protein, at 1,066,621 to 1,066,962 _RS24510 BPHYT_RS24515: BPHYT_RS24515 - antibiotic biosynthesis monooxygenase, at 1,067,230 to 1,067,532 _RS24515
Group Condition BPHYT_RS24495 BPHYT_RS24500 BPHYT_RS24505 BPHYT_RS24510 BPHYT_RS24515
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.2 -4.0 -0.5 -0.4 N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.4 -2.7 -0.7 -0.6 N.D.
motility outer cut, LB soft agar motility assay -0.5 -2.8 -0.5 +0.4 N.D.
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 -0.1 -3.0 -0.4 +0.4 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.4 -2.3 -0.6 -0.5 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.3 -1.6 -0.4 -0.6 N.D.
motility inner cut, LB soft agar motility assay -0.2 -2.1 -0.6 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -1.4 +0.1 -1.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 -3.3 -0.4 +0.3 N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -1.4 -2.0 +1.0 -0.3 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 -2.4 -0.5 +0.1 N.D.
phage 24hr PHYTO3 MOI 10 +0.3 -2.1 +0.6 -1.1 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.0 +0.3 -0.6 -1.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 -1.3 +0.3 -0.4 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.8 -1.8 -0.1 +0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -2.2 +0.1 +0.4 N.D.
nitrogen source L-Isoleucine (N) -1.7 -0.6 +0.7 +0.1 N.D.
phage P. phyto PHYTO2 MOI 1 -0.2 +0.8 -2.0 -0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 -1.5 -0.8 +0.1 N.D.
phage 24hr PHYTO7 MOI 10 -1.0 -1.1 +0.7 +0.1 N.D.
phage 36hr PHYTO10 MOI 10 +1.0 -1.6 -0.7 +0.3 N.D.
phage 36hr PHYTO2 MOI 1 -0.6 -0.9 -0.4 +1.0 N.D.
supernatant control Vogels_fungal_media 0.1X +0.9 -1.5 -0.4 +0.4 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 -1.5 +0.3 +0.3 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +1.4 -1.6 +0.0 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.9 -0.3 -0.4 -0.5 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +1.9 -1.1 +0.4 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 -0.8 -0.2 +1.6 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +2.0 -0.5 +0.3 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +2.4 +0.1 -0.5 +0.6 N.D.
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