Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS24340 and BPHYT_RS24345 are separated by 282 nucleotidesBPHYT_RS24345 and BPHYT_RS24350 are separated by 45 nucleotidesBPHYT_RS24350 and BPHYT_RS24355 are separated by 99 nucleotidesBPHYT_RS24355 and BPHYT_RS24360 are separated by 294 nucleotides BPHYT_RS24340: BPHYT_RS24340 - XRE family transcriptional regulator, at 1,027,101 to 1,027,355 _RS24340 BPHYT_RS24345: BPHYT_RS24345 - FAD-dependent oxidoreductase, at 1,027,638 to 1,028,978 _RS24345 BPHYT_RS24350: BPHYT_RS24350 - hypothetical protein, at 1,029,024 to 1,029,656 _RS24350 BPHYT_RS24355: BPHYT_RS24355 - hypothetical protein, at 1,029,756 to 1,030,007 _RS24355 BPHYT_RS24360: BPHYT_RS24360 - potassium transporter TrkA, at 1,030,302 to 1,031,378 _RS24360
Group Condition BPHYT_RS24340 BPHYT_RS24345 BPHYT_RS24350 BPHYT_RS24355 BPHYT_RS24360
phage P. phyto PHYTO2 MOI 1 N.D. N.D. -1.8 N.D. -0.2
phage 36hr PHYTO3 MOI 1 N.D. N.D. -1.3 N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.9 N.D. -0.8
nutrient L-Serine N.D. N.D. -1.5 N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -1.0 N.D. -0.6
nitrogen source L-Lysine (N) N.D. N.D. -1.9 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -1.3 N.D. -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -1.5 N.D. +0.1
phage 24hr PHYTO3 MOI 1 N.D. N.D. -0.9 N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -1.5 N.D. +0.2
phage 36hr PHYTO3 MOI 0.1 N.D. N.D. -1.1 N.D. -0.2
phage 36hr PHYTO1 MOI 1 N.D. N.D. -1.0 N.D. -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. N.D. -0.6 N.D. -0.6
carbon source Phenylacetic 5 mM (C) N.D. N.D. -1.0 N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.2 N.D. +0.0
nitrogen source L-Serine (N) N.D. N.D. -1.4 N.D. +0.3
phage 24hr PHYTO2 MOI 1 N.D. N.D. -1.0 N.D. +0.3
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent N.D. N.D. +1.1 N.D. -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +1.2 N.D. -0.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. +1.1 N.D. -0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. +1.2 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +1.1 N.D. +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.9 N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.9 N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.9 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +1.2 N.D. +0.1
carbon source Tween 20 (C) N.D. N.D. +1.2 N.D. +0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +2.7 N.D. -0.2
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +2.6 N.D. -0.0
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +3.0 N.D. -0.4
remove
BPHYT_RS24340
plot		 remove
BPHYT_RS24345
plot		 remove
BPHYT_RS24350		 remove
BPHYT_RS24355
plot		 remove
BPHYT_RS24360
plot