Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS24275 and BPHYT_RS24280 are separated by 398 nucleotidesBPHYT_RS24280 and BPHYT_RS24285 are separated by 134 nucleotidesBPHYT_RS24285 and BPHYT_RS24290 are separated by 92 nucleotidesBPHYT_RS24290 and BPHYT_RS24295 are separated by 476 nucleotides BPHYT_RS24275: BPHYT_RS24275 - alpha-ketoglutarate decarboxylase, at 1,011,630 to 1,012,904 _RS24275 BPHYT_RS24280: BPHYT_RS24280 - DSBA oxidoreductase, at 1,013,303 to 1,014,844 _RS24280 BPHYT_RS24285: BPHYT_RS24285 - TetR family transcriptional regulator, at 1,014,979 to 1,015,704 _RS24285 BPHYT_RS24290: BPHYT_RS24290 - hypothetical protein, at 1,015,797 to 1,016,516 _RS24290 BPHYT_RS24295: BPHYT_RS24295 - response regulator receiver, at 1,016,993 to 1,017,505 _RS24295
Group Condition BPHYT_RS24275 BPHYT_RS24280 BPHYT_RS24285 BPHYT_RS24290 BPHYT_RS24295
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.5 +0.0 -3.5 -0.1 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.3 -0.5 -2.2 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days +0.3 +0.0 -2.6 -0.6 N.D.
phage 24hr PHYTO9 MOI 10 -0.7 -0.2 -1.9 +0.0 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.2 +0.0 -2.1 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.0 -0.4 -1.7 -0.3 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.6 +0.1 -2.2 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -0.1 -1.8 +0.0 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 -0.3 -1.6 -0.5 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.4 -2.8 +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 -0.6 -1.6 -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.3 -0.1 -2.2 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +0.2 -2.6 -0.1 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.1 -1.6 -0.4 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.0 -1.9 -0.2 N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.1 -2.2 +0.1 N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.1 -1.7 -0.3 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.1 -2.2 +0.1 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.1 +0.2 -1.1 -0.8 N.D.
phage 24hr PHYTO3 MOI 10 -0.8 +0.4 -0.9 -0.2 N.D.
phage 36hr PHYTO4 MOI 1 -0.2 +0.4 -1.6 +0.0 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.9 -0.2 +0.4 -0.7 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.6 +0.0 -1.7 -0.2 N.D.
phage 24hr PHYTO10 MOI 10 +0.4 -0.3 -1.4 +0.1 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +1.4 +0.2 -2.7 -0.0 N.D.
phage 24hr PHYTO7 MOI 1 +0.4 -0.1 -1.5 +0.3 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +1.1 +0.1 -0.9 -0.7 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.5 -0.3 +1.2 -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -0.2 +1.8 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.7 -0.2 +1.7 +0.4 N.D.
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