Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS24225 and BPHYT_RS24230 are separated by 82 nucleotidesBPHYT_RS24230 and BPHYT_RS24235 are separated by 73 nucleotidesBPHYT_RS24235 and BPHYT_RS24240 are separated by 123 nucleotidesBPHYT_RS24240 and BPHYT_RS24245 are separated by 322 nucleotides BPHYT_RS24225: BPHYT_RS24225 - hypothetical protein, at 1,000,757 to 1,001,638 _RS24225 BPHYT_RS24230: BPHYT_RS24230 - acetoin dehydrogenase, at 1,001,721 to 1,002,629 _RS24230 BPHYT_RS24235: BPHYT_RS24235 - 4-hydroxyacetophenone monooxygenase, at 1,002,703 to 1,004,304 _RS24235 BPHYT_RS24240: BPHYT_RS24240 - ABC transporter substrate-binding protein, at 1,004,428 to 1,005,420 _RS24240 BPHYT_RS24245: BPHYT_RS24245 - MerR family transcriptional regulator, at 1,005,743 to 1,006,609 _RS24245
Group Condition BPHYT_RS24225 BPHYT_RS24230 BPHYT_RS24235 BPHYT_RS24240 BPHYT_RS24245
phage 24hr PHYTO6 MOI 1 -0.0 N.D. -1.0 -0.5 -0.7
phage 24hr PHYTO9 MOI 10 +0.0 N.D. -1.1 -0.5 -0.7
phage 24hr PHYTO6 MOI 0.1 -0.1 N.D. -0.2 -1.2 -0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.5 N.D. -0.5 -0.7 -0.4
phage 36hr PHYTO2 MOI 1 +0.1 N.D. -1.1 -0.4 -0.6
phage 36hr PHYTO8 MOI 10 -0.2 N.D. -0.6 -0.4 -0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.2 N.D. -0.5 -0.6 -0.7
phage 24hr PHYTO1 MOI 1 -0.2 N.D. -1.2 +0.1 -0.6
carbon source Suberic (C) -0.4 N.D. -0.4 -0.8 -0.2
phage 24hr PHYTO10 MOI 10 -0.4 N.D. -0.4 -0.7 -0.3
phage 24hr PHYTO10 MOI 1 +0.3 N.D. -1.2 +0.0 -0.9
phage 36hr PHYTO2 MOI 0.1 -0.3 N.D. -0.6 -0.2 -0.7
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 -0.2 N.D. -0.6 -0.7 -0.3
phage 36hr PHYTO2 MOI 1 +0.5 N.D. -0.9 -0.0 -1.2
phage 24hr PHYTO6 MOI 10 +0.3 N.D. -0.7 -0.5 -0.5
phage P. phyto PHYTO2 MOI 1 -0.2 N.D. +0.3 -0.6 -0.8
phage 36hr PHYTO7 MOI 1 +0.3 N.D. -0.8 -0.5 -0.2
phage PHYTO3 MOI 0.1 +0.5 N.D. -0.6 -0.3 -0.7
phage 24hr PHYTO3 MOI 10 +0.4 N.D. -0.9 -0.4 -0.1
phage 24hr PHYTO6 MOI 0.1 +0.4 N.D. -0.8 -0.2 -0.5
phage 24hr PHYTO2 MOI 0.1 +0.6 N.D. -0.6 -0.4 -0.5
phage 36hr PHYTO10 MOI 10 +0.5 N.D. +0.2 -0.5 -0.7
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.3 N.D. -0.3 +0.6 -1.1
phage P. phyto PHYTO2 MOI 1 +0.5 N.D. -0.7 -0.4 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 N.D. -0.3 +0.4 -1.0
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.5 N.D. +0.5 -0.6 -0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.7 N.D. -0.5 -0.6 +0.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.7 N.D. -0.4 +0.3 -0.6
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.8 N.D. -0.1 +0.3 -0.6
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.7 N.D. +0.2 +0.3 -0.8
remove
BPHYT_RS24225
plot		 remove
BPHYT_RS24230
plot		 remove
BPHYT_RS24235		 remove
BPHYT_RS24240
plot		 remove
BPHYT_RS24245
plot