Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS24155	BPHYT_RS24160	BPHYT_RS24165	BPHYT_RS24170	BPHYT_RS24175
carbon source	D-Galacturonic Acid (C)	-2.2	-1.2	-0.6	-1.1	-0.2
phage	36hr PHYTO9 MOI 1	+0.2	-0.1	-0.2	-0.2	-3.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.0	-1.0	-0.5	-1.9
phage	24hr PHYTO1 MOI 10	+0.2	-0.0	-0.4	-0.4	-2.9
phage	24hr PHYTO2 MOI 0.1	-0.2	+0.1	-0.1	-0.1	-2.1
phage	36hr PHYTO2 MOI 1	-0.3	-0.0	-0.9	+0.1	-1.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.2	-0.1	-0.2	-1.4	-0.7
phage	P. phyto PHYTO2 MOI 0.1	+0.1	-0.1	+0.1	-0.0	-2.2
nophagecontrol	24hr Phyto Lib Only	-0.1	+0.0	-0.1	-0.1	-1.9
supernatant control	Vogels_fungal_media; pH 5.5	+0.2	-0.4	+0.1	-0.0	-2.0
phage	36hr PHYTO11 MOI 1	+0.1	-0.3	-0.8	-1.2	+0.2
phage	36hr PHYTO10 MOI 10	-0.1	-0.1	-0.5	+0.0	-1.4
phage	P. phyto PHYTO2 MOI 1	-0.0	+0.1	-0.7	+0.1	-1.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.2	-0.3	-0.7	-0.8	+0.4
phage	PHYTO3 MOI 0.1	+0.3	+0.2	-0.4	+0.2	-1.7
phage	36hr PHYTO11 MOI 0.1	-0.0	+0.3	+0.2	-0.9	-0.7
phage	36hr PHYTO7 MOI 1	+0.2	+0.4	-0.3	-0.9	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-0.5	-0.1	+0.8	-1.1
carbon source	Suberic (C)	-0.1	-0.7	-0.1	+0.7	-0.7
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.1	+0.0	+0.7	-0.8	-0.5
motility	outer cut, LB soft agar motility assay	+0.3	+0.0	+0.6	-1.1	-0.5
phage	24hr PHYTO11 MOI 0.1	+0.1	+0.2	-0.2	+0.5	-1.2
phage	36hr PHYTO8 MOI 10	+0.3	+0.0	-0.9	-0.5	+0.6
phage	36hr PHYTO1 MOI 1	-0.3	-0.1	-0.0	-0.6	+0.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.3	+0.1	-0.6	-0.3	+1.2
vitamin	With vitamins t1	-0.5	-0.2	-0.2	+0.5	+0.7
carbon source	Malonic (C)	+0.2	+0.2	+0.5	+0.3	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	-0.6	+0.5	+0.4	+0.5
vitamin	No vitamins t1	-0.1	-0.2	+0.1	+0.7	+1.0
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.1	-0.2	+0.3	+0.2	+1.3