Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS24125 and BPHYT_RS24130 are separated by 241 nucleotidesBPHYT_RS24130 and BPHYT_RS24135 are separated by 30 nucleotidesBPHYT_RS24135 and BPHYT_RS24140 are separated by 222 nucleotidesBPHYT_RS24140 and BPHYT_RS24145 are separated by 101 nucleotides BPHYT_RS24125: BPHYT_RS24125 - endopolygalacturonase, at 978,791 to 980,806 _RS24125 BPHYT_RS24130: BPHYT_RS24130 - tartronate semialdehyde reductase, at 981,048 to 981,941 _RS24130 BPHYT_RS24135: BPHYT_RS24135 - alpha-dehydro-beta-deoxy-D-glucarate aldolase, at 981,972 to 982,772 _RS24135 BPHYT_RS24140: BPHYT_RS24140 - 2,5-dioxovalerate dehydrogenase, at 982,995 to 984,578 _RS24140 BPHYT_RS24145: BPHYT_RS24145 - GntR family transcriptional regulator, at 984,680 to 985,423 _RS24145
Group Condition BPHYT_RS24125 BPHYT_RS24130 BPHYT_RS24135 BPHYT_RS24140 BPHYT_RS24145
carbon source D-Galacturonic Acid (C) -0.5 N.D. -0.5 -2.4 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -1.3 N.D. +0.1 -0.4 N.D.
phage 36hr PHYTO4 MOI 0.1 -1.2 N.D. +0.8 -0.8 N.D.
phage 24hr PHYTO4 MOI 10 -1.6 N.D. +0.4 +0.1 N.D.
phage 24hr PHYTO2 MOI 0.1 -1.3 N.D. +1.1 -0.7 N.D.
nophagecontrol 36hr Phyto Lib only -0.6 N.D. +0.8 -0.8 N.D.
phage 36hr PHYTO7 MOI 0.1 -1.3 N.D. +0.7 -0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 N.D. -0.8 +0.9 N.D.
phage 24hr PHYTO2 MOI 0.1 -0.5 N.D. +0.9 -0.8 N.D.
phage 36hr PHYTO9 MOI 0.1 -0.9 N.D. +0.8 -0.2 N.D.
phage 36hr PHYTO2 MOI 1 -0.7 N.D. +1.1 -0.5 N.D.
phage 36hr PHYTO6 MOI 10 -0.7 N.D. +1.2 -0.5 N.D.
phage 36hr PHYTO4 MOI 1 -0.4 N.D. +1.0 -0.7 N.D.
phage 24hr PHYTO2 MOI 1 -1.0 N.D. +0.5 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 N.D. -0.4 +1.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 N.D. +1.2 -0.5 N.D.
phage 24hr PHYTO MOI 0.1 -0.7 N.D. +1.0 -0.2 N.D.
phage 36hr PHYTO10 MOI 10 -1.1 N.D. +0.8 +0.4 N.D.
phage 24hr PHYTO10 MOI 10 -0.9 N.D. +0.8 +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 N.D. +0.5 +0.7 N.D.
phage 24hr PHYTO1 MOI 10 -0.8 N.D. +1.0 -0.1 N.D.
phage 24hr PHYTO8 MOI 1 -1.0 N.D. +0.8 +0.3 N.D.
phage 36hr PHYTO7 MOI 1 -1.1 N.D. +1.0 +0.5 N.D.
phage 36hr PHYTO6 MOI 0.1 -0.7 N.D. +1.3 -0.2 N.D.
phage 24hr PHYTO MOI 0.1 -0.8 N.D. +1.1 +0.1 N.D.
phage 24hr PHYTO4 MOI 0.1 -0.7 N.D. +0.8 +0.4 N.D.
phage 36hr PHYTO1 MOI 10 -0.7 N.D. +1.3 -0.1 N.D.
phage 36hr PHYTO11 MOI 0.1 -0.3 N.D. +1.0 +0.6 N.D.
phage P. phyto corn MOI 1 -0.4 N.D. +1.0 +0.6 N.D.
phage 24hr PHYTO7 MOI 10 +0.4 N.D. +1.3 +0.6 N.D.
remove
BPHYT_RS24125
plot		 remove
BPHYT_RS24130
plot		 remove
BPHYT_RS24135		 remove
BPHYT_RS24140
plot		 remove
BPHYT_RS24145
plot