Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS24105	BPHYT_RS24110	BPHYT_RS24115	BPHYT_RS24120	BPHYT_RS24125
phage	24hr PHYTO8 MOI 1	-1.3	-0.3	-0.3	-0.6	-1.0
phage	24hr PHYTO MOI 0.1	-1.0	-0.3	-0.2	-0.9	-0.8
phage	36hr PHYTO4 MOI 1	-0.4	-0.5	-0.2	-0.8	-0.8
phage	36hr PHYTO9 MOI 0.1	-0.3	-0.5	-0.6	-0.2	-0.9
motility	outer cut, LB soft agar motility assay	-1.3	-0.2	-0.5	-0.4	-0.1
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-1.2	+0.3	-0.6	-0.3	-0.4
phage	36hr PHYTO1 MOI 10	+0.3	-0.1	+0.1	-1.0	-1.1
phage	24hr PHYTO2 MOI 1	+0.1	+0.4	-0.2	-1.0	-1.0
phage	24hr PHYTO3 MOI 10	-1.8	-0.3	+0.9	+0.2	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	-0.6	+0.6	-0.1	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.7	-0.2	+0.9	-0.1	-1.3
supernatant control	Vogels_fungal_media 0.1X	-1.3	-0.5	+0.5	+0.1	-0.2
phage	24hr PHYTO4 MOI 10	+0.3	+0.4	-0.4	+0.0	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.1	+0.5	-0.5	+0.2	-0.2
phage	36hr PHYTO11 MOI 0.1	+1.2	-0.3	+0.1	-1.0	-1.2
phage	36hr PHYTO6 MOI 10	+0.8	-0.8	+0.3	-0.5	-0.7
carbon source	D-Galacturonic Acid (C)	+0.9	-0.1	-0.6	-0.6	-0.5
phage	24hr PHYTO2 MOI 0.1	+0.7	+0.0	+0.6	-0.4	-1.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.8	+0.0	-0.6	+1.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.3	+0.1	-0.2	-0.8	-0.3
nitrogen source	L-Alanine (N)	+0.6	-0.4	+0.7	-0.5	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	-0.7	+0.4	+0.9	-0.5
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	-0.6	+0.4	+1.1	-0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.6	+0.9	-0.4	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	+0.8	+0.8	-0.7	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+1.8	+0.1	+0.3	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+2.2	+0.1	-0.2	-0.4	-0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+2.2	-0.1	+0.1	-0.2	-0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+2.8	+0.2	-0.1	-0.3	-0.1
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+1.2	+0.5	+0.2	+0.6	-0.1