Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS24095	BPHYT_RS24100	BPHYT_RS24105	BPHYT_RS24110	BPHYT_RS24115
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-6.1	N.D.	-1.1	+0.4	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-5.5	N.D.	-0.6	-0.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-5.1	N.D.	-0.4	-0.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-5.4	N.D.	+0.4	-0.5	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-4.4	N.D.	-0.9	+0.0	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-4.0	N.D.	-1.1	+0.5	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-4.2	N.D.	-0.6	-0.6	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-4.4	N.D.	-0.2	-0.3	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-3.9	N.D.	-0.1	-0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-4.1	N.D.	+0.4	-0.7	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-3.2	N.D.	+0.2	-0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-5.4	N.D.	+2.2	+0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-2.9	N.D.	+0.3	-0.0	-0.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-1.6	N.D.	-0.8	+0.0	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-3.6	N.D.	+1.3	+0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-2.3	N.D.	+0.4	+0.2	-0.7
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.9	N.D.	-1.2	+0.3	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.1	N.D.	-0.4	+0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-2.5	N.D.	+0.4	-0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-3.0	N.D.	+1.0	-0.3	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.3	N.D.	-0.1	+1.8	+0.1
phage	24hr PHYTO3 MOI 10	+1.0	N.D.	-1.8	-0.3	+0.9
phage	36hr PHYTO6 MOI 10	+1.1	N.D.	+0.8	-0.8	+0.3
nophagecontrol	36hr Phyto Lib only	+1.9	N.D.	+0.5	-0.6	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.9	N.D.	-0.1	-0.4	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.9	N.D.	-0.5	+0.3	+0.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.1	N.D.	+2.8	+0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.2	N.D.	+0.3	+1.0	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.8	N.D.	+0.5	+0.6	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.0	N.D.	-0.1	+1.1	+1.1