Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS24010 and BPHYT_RS24015 are separated by 35 nucleotidesBPHYT_RS24015 and BPHYT_RS24020 are separated by 38 nucleotidesBPHYT_RS24020 and BPHYT_RS24025 are separated by 180 nucleotidesBPHYT_RS24025 and BPHYT_RS24030 are separated by 25 nucleotides BPHYT_RS24010: BPHYT_RS24010 - L-histidine ABC transporter, permease component 2 (from data), at 952,179 to 952,931 _RS24010 BPHYT_RS24015: BPHYT_RS24015 - L-histidine ABC transporter, ATPase component (from data), at 952,967 to 953,758 _RS24015 BPHYT_RS24020: BPHYT_RS24020 - phenylalanine/histidine ammonia-lyase, at 953,797 to 955,446 _RS24020 BPHYT_RS24025: BPHYT_RS24025 - histidine utilization repressor, at 955,627 to 956,310 _RS24025 BPHYT_RS24030: BPHYT_RS24030 - histidine utilization repressor, at 956,336 to 957,139 _RS24030
Group Condition BPHYT_RS24010 BPHYT_RS24015 BPHYT_RS24020 BPHYT_RS24025 BPHYT_RS24030
carbon source D-Glucose (C) -1.7 N.D. -0.2 -0.5 N.D.
phage 36hr PHYTO2 MOI 1 -1.1 N.D. -0.0 -0.5 N.D.
carbon source L-Histidine (C) -1.6 N.D. -0.1 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.8 N.D. +0.6 -0.2 N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -0.8 N.D. -0.0 -0.5 N.D.
phage 36hr PHYTO10 MOI 10 -1.0 N.D. -0.2 -0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.7 N.D. +0.2 -0.7 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -1.2 N.D. +0.3 -0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.0 N.D. +0.1 -1.1 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.2 N.D. +0.2 -0.9 N.D.
nitrogen source D-Alanine (N) -0.6 N.D. +0.3 -0.4 N.D.
carbon source D-Glucose 20 mM (C) -1.0 N.D. +0.2 +0.1 N.D.
supernatant control Vogels_fungal_media; pH 5.5 -0.9 N.D. +0.3 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 N.D. -0.7 +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 N.D. +0.1 -0.7 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.8 N.D. +0.6 +0.3 N.D.
carbon source 2-Deoxy-D-Ribose (C) +0.8 N.D. -0.1 -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.7 N.D. +0.1 -0.5 N.D.
phage 36hr PHYTO8 MOI 10 +1.0 N.D. -0.1 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. +0.6 -0.6 N.D.
nitrogen source L-Alanine (N) +0.7 N.D. +0.3 -0.4 N.D.
phage 24hr PHYTO8 MOI 1 +0.7 N.D. +0.4 -0.4 N.D.
carbon source D-Xylose (C) +1.0 N.D. -0.1 -0.2 N.D.
carbon source L-Fucose (C) +0.8 N.D. -0.3 +0.3 N.D.
stress Dimethyl Sulfoxide 6 vol% +0.9 N.D. +0.2 -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 N.D. +1.1 +0.2 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +1.2 N.D. +0.1 -0.1 N.D.
stress Nickel (II) chloride 1 mM +1.0 N.D. +0.1 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 N.D. +0.8 +0.1 N.D.
nutrient L-Serine +1.2 N.D. -0.0 +0.5 N.D.
remove
BPHYT_RS24010
plot		 remove
BPHYT_RS24015
plot		 remove
BPHYT_RS24020		 remove
BPHYT_RS24025
plot		 remove
BPHYT_RS24030
plot