Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS23975 and BPHYT_RS23980 are separated by 37 nucleotidesBPHYT_RS23980 and BPHYT_RS23985 are separated by 98 nucleotidesBPHYT_RS23985 and BPHYT_RS23990 are separated by 405 nucleotidesBPHYT_RS23990 and BPHYT_RS23995 are separated by 12 nucleotides BPHYT_RS23975: BPHYT_RS23975 - peroxidase, at 944,120 to 945,424 _RS23975 BPHYT_RS23980: BPHYT_RS23980 - hypothetical protein, at 945,462 to 946,625 _RS23980 BPHYT_RS23985: BPHYT_RS23985 - carbohydrate porin, at 946,724 to 948,247 _RS23985 BPHYT_RS23990: BPHYT_RS23990 - N-hydroxyarylamine O-acetyltransferase, at 948,653 to 949,492 _RS23990 BPHYT_RS23995: BPHYT_RS23995 - isoprenylcysteine carboxyl methyltransferase, at 949,505 to 950,185 _RS23995
Group Condition BPHYT_RS23975 BPHYT_RS23980 BPHYT_RS23985 BPHYT_RS23990 BPHYT_RS23995
pH LB, pH4 -0.2 +0.1 -5.2 +0.3 +0.2
phage 36hr PHYTO7 MOI 1 +0.0 -0.6 +0.0 -3.7 -0.2
phage 36hr PHYTO8 MOI 10 -1.2 -0.5 +0.2 -2.2 -0.2
phage PHYTO3 MOI 0.1 +0.4 +0.1 -0.2 -4.1 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.1 +0.1 -3.9 -0.3
phage 36hr PHYTO11 MOI 0.1 +0.7 -0.1 -0.2 -4.0 -0.1
phage 24hr PHYTO6 MOI 0.1 +0.9 -0.1 -0.2 -3.9 -0.1
phage 24hr PHYTO3 MOI 10 -2.2 -0.3 +0.3 -0.8 -0.4
pH LB, pH4 +0.3 +0.2 -4.4 +0.1 +0.4
phage 36hr PHYTO3 MOI 1 -1.1 +0.0 -0.3 -1.3 -0.6
phage 36hr PHYTO11 MOI 0.1 -0.3 -0.0 -0.1 -2.4 -0.4
phage 24hr PHYTO6 MOI 10 -1.9 +0.3 +0.2 -1.8 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.0 +0.4 +0.5 -2.3 -1.4
phage 24hr PHYTO4 MOI 0.1 +0.2 -0.3 +0.2 -2.3 -0.5
phage 36hr PHYTO1 MOI 10 -0.9 -0.5 -0.4 -1.1 +0.1
phage 36hr PHYTO11 MOI 1 -1.2 +0.1 +0.0 -1.6 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -1.3 -0.8 -0.1 +0.7 -1.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 -0.3 -0.1 -2.4 -0.5
carbon source Suberic (C) -0.7 +0.5 -0.5 -1.3 +0.0
phage 24hr PHYTO2 MOI 0.1 +0.9 -0.1 -0.1 -2.2 -0.4
phage 36hr PHYTO2 MOI 1 -1.6 +0.3 -0.3 -0.6 +0.4
phage P. phyto PHYTO2 MOI 1 -2.5 -0.6 -0.0 +2.1 -0.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 +1.0 -0.4 -2.2 -0.2
phage 24hr PHYTO7 MOI 10 -0.6 -0.4 -0.4 +0.9 -0.6
carbon source 2-Deoxy-D-ribonic lithium salt (C) -2.4 +0.7 -0.1 +1.1 -0.2
phage 36hr PHYTO10 MOI 10 +1.1 -0.1 -0.2 -1.5 -0.1
phage 24hr PHYTO3 MOI 1 +0.9 +0.3 -0.3 -0.8 -0.8
phage 24hr PHYTO8 MOI 1 +0.1 +0.8 -0.3 +0.8 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 -0.5 -0.3 -0.2 +1.8
stress Nickel (II) chloride 1 mM +0.3 +0.4 -1.1 +5.3 +0.9
remove
BPHYT_RS23975
plot		 remove
BPHYT_RS23980
plot		 remove
BPHYT_RS23985		 remove
BPHYT_RS23990
plot		 remove
BPHYT_RS23995
plot