Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS23915 and BPHYT_RS23920 overlap by 4 nucleotidesBPHYT_RS23920 and BPHYT_RS23925 overlap by 4 nucleotidesBPHYT_RS23925 and BPHYT_RS23930 overlap by 13 nucleotidesBPHYT_RS23930 and BPHYT_RS23935 are separated by 2 nucleotides BPHYT_RS23915: BPHYT_RS23915 - malonate decarboxylase subunit gamma, at 931,399 to 932,217 _RS23915 BPHYT_RS23920: BPHYT_RS23920 - malonate decarboxylase subunit beta, at 932,214 to 933,098 _RS23920 BPHYT_RS23925: BPHYT_RS23925 - malonate decarboxylase subunit delta, at 933,095 to 933,409 _RS23925 BPHYT_RS23930: BPHYT_RS23930 - triphosphoribosyl-dephospho-CoA synthase, at 933,397 to 934,320 _RS23930 BPHYT_RS23935: BPHYT_RS23935 - malonate decarboxylase subunit alpha, at 934,323 to 936,005 _RS23935
Group Condition BPHYT_RS23915 BPHYT_RS23920 BPHYT_RS23925 BPHYT_RS23930 BPHYT_RS23935
carbon source Malonic (C) N.D. -3.2 N.D. -2.6 -3.2
carbon source Malonic (C) N.D. -2.1 N.D. -3.6 -3.1
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. -2.4 N.D. -1.3 -2.3
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. -0.9 N.D. -3.0 -0.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. -0.9 N.D. -0.9 -1.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. -1.3 N.D. -0.8 -0.4
phage P. phyto PHYTO2 MOI 1 N.D. -2.6 N.D. +0.8 -0.0
phage 24hr PHYTO4 MOI 10 N.D. -2.7 N.D. +0.4 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.7 N.D. -1.0 +0.2
phage 24hr PHYTO11 MOI 1 N.D. -1.6 N.D. +0.3 +0.1
nophagecontrol 36hr Phyto Lib Only N.D. -1.5 N.D. +0.4 +0.1
phage 24hr PHYTO4 MOI 0.1 N.D. -1.7 N.D. +0.4 +0.3
phage 36hr PHYTO6 MOI 10 N.D. -1.5 N.D. +0.5 +0.1
phage 36hr PHYTO6 MOI 0.1 N.D. -1.5 N.D. +0.3 +0.5
motility outer cut, LB soft agar motility assay N.D. -0.7 N.D. +0.7 -0.5
nophagecontrol 36hr Phyto Lib only N.D. -1.2 N.D. +0.5 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.4 N.D. +1.4 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.0 N.D. +1.1 -0.5
phage 36hr PHYTO10 MOI 10 N.D. -1.1 N.D. +0.2 +0.6
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB N.D. +1.1 N.D. -1.4 +0.3
phage 24hr PHYTO1 MOI 10 N.D. -0.8 N.D. +1.0 -0.1
phage 24hr PHYTO10 MOI 10 N.D. -0.7 N.D. +0.9 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.3 N.D. +1.3 -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. +1.5 N.D. -0.9 +0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. -0.7 N.D. +1.4 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.7 N.D. +1.6 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.4 N.D. +2.0 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.7 N.D. +1.7 +0.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +1.0 N.D. +0.9 -0.1
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent N.D. +0.7 N.D. +1.0 +0.3
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