Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS23910 and BPHYT_RS23915 overlap by 1 nucleotidesBPHYT_RS23915 and BPHYT_RS23920 overlap by 4 nucleotidesBPHYT_RS23920 and BPHYT_RS23925 overlap by 4 nucleotidesBPHYT_RS23925 and BPHYT_RS23930 overlap by 13 nucleotides BPHYT_RS23910: BPHYT_RS23910 - phosphoribosyl-dephospho-CoA transferase, at 930,701 to 931,399 _RS23910 BPHYT_RS23915: BPHYT_RS23915 - malonate decarboxylase subunit gamma, at 931,399 to 932,217 _RS23915 BPHYT_RS23920: BPHYT_RS23920 - malonate decarboxylase subunit beta, at 932,214 to 933,098 _RS23920 BPHYT_RS23925: BPHYT_RS23925 - malonate decarboxylase subunit delta, at 933,095 to 933,409 _RS23925 BPHYT_RS23930: BPHYT_RS23930 - triphosphoribosyl-dephospho-CoA synthase, at 933,397 to 934,320 _RS23930
Group Condition BPHYT_RS23910 BPHYT_RS23915 BPHYT_RS23920 BPHYT_RS23925 BPHYT_RS23930
carbon source Malonic (C) -3.0 N.D. -3.2 N.D. -2.6
carbon source Malonic (C) -2.3 N.D. -2.1 N.D. -3.6
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -2.6 N.D. -0.9 N.D. -3.0
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -3.2 N.D. -1.3 N.D. -0.8
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -1.3 N.D. -2.4 N.D. -1.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -3.0 N.D. -0.9 N.D. -0.9
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -2.3 N.D. -0.8 N.D. -0.4
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.4 N.D. -0.7 N.D. -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -2.3 N.D. -0.7 N.D. -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.8 N.D. +0.1 N.D. -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -2.4 N.D. +0.4 N.D. -0.3
phage P. phyto PHYTO2 MOI 1 +0.8 N.D. -2.6 N.D. +0.8
phage 24hr PHYTO4 MOI 10 +1.4 N.D. -2.7 N.D. +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 N.D. -1.4 N.D. +1.4
phage 36hr PHYTO6 MOI 0.1 +1.8 N.D. -1.5 N.D. +0.3
phage 24hr PHYTO4 MOI 0.1 +1.8 N.D. -1.7 N.D. +0.4
phage 36hr PHYTO6 MOI 10 +1.6 N.D. -1.5 N.D. +0.5
phage 24hr PHYTO11 MOI 1 +2.2 N.D. -1.6 N.D. +0.3
nophagecontrol 36hr Phyto Lib only +1.9 N.D. -1.2 N.D. +0.5
phage 36hr PHYTO3 MOI 1 +2.2 N.D. -1.0 N.D. +0.5
nophagecontrol 36hr Phyto Lib Only +1.9 N.D. -0.6 N.D. +0.7
phage 24hr PHYTO10 MOI 10 +1.9 N.D. -0.7 N.D. +0.9
phage 24hr PHYTO7 MOI 10 +1.9 N.D. -0.6 N.D. +0.7
phage 24hr PHYTO1 MOI 10 +2.0 N.D. -0.8 N.D. +1.0
phage 24hr PHYTO3 MOI 1 +2.1 N.D. -0.6 N.D. +0.7
phage 36hr PHYTO2 MOI 1 +2.6 N.D. -0.5 N.D. +0.0
phage 36hr PHYTO2 MOI 1 +2.5 N.D. -0.8 N.D. +0.5
phage 36hr PHYTO3 MOI 1 +2.3 N.D. -0.5 N.D. +0.6
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +1.8 N.D. -0.7 N.D. +1.4
phage 24hr PHYTO3 MOI 10 +2.7 N.D. -0.4 N.D. +0.8
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