Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS23845	BPHYT_RS23850	BPHYT_RS23855	BPHYT_RS23860	BPHYT_RS23865
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.1	-1.8	-0.6	+0.7
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	-0.1	-1.8	+0.2	+0.0
nitrogen source	L-Lysine (N)	N.D.	-1.6	+0.5	-0.3	+0.0
carbon source	D-Glucose (C)	N.D.	+0.5	-0.3	-1.6	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.4	-0.7	-0.5	+0.4
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	N.D.	-0.5	-0.7	-0.4	+0.4
phage	36hr PHYTO4 MOI 1	N.D.	+0.5	-1.5	+0.3	-0.1
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	N.D.	-0.4	-1.0	+0.7	-0.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.5	-0.7	-0.7	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	N.D.	-0.5	-0.2	-0.7	+0.6
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	N.D.	-0.3	-0.7	+0.7	-0.4
phage	24hr PHYTO3 MOI 10	N.D.	+0.6	-1.8	+0.5	+0.1
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	N.D.	+0.0	-1.1	+0.7	-0.2
carbon source	D-Glucose 20 mM (C)	N.D.	+0.8	-0.1	-0.7	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.2	-0.7	-0.7	+0.7
phage	36hr PHYTO2 MOI 1	N.D.	+0.5	+0.6	-0.8	-0.7
phage	24hr PHYTO10 MOI 10	N.D.	+0.6	-1.2	+0.2	+0.1
phage	PHYTO3 MOI 0.1	N.D.	+0.6	-0.3	-0.7	+0.4
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	N.D.	+0.4	+0.7	-0.7	-0.4
nitrogen source	L-Isoleucine (N)	N.D.	+0.5	-0.7	+0.6	-0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.4	+1.1	-0.6	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+1.2	+0.3	-0.4	-0.1
nitrogen source	L-Serine (N)	N.D.	+0.2	-0.7	+1.2	+0.3
nitrogen source	L-Glutamic (N)	N.D.	-0.3	+0.1	+0.8	+0.7
carbon source	Suberic (C)	N.D.	+0.2	+1.3	+0.3	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.9	+0.4	+0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.1	+0.2	+1.5	+0.5
carbon source	2-Deoxy-D-ribonic lithium salt (C)	N.D.	+0.5	+0.9	+0.4	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.2	+2.0	+0.2	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.7	+1.1	+0.3	+1.9