Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS23740 and BPHYT_RS23745 are separated by 277 nucleotidesBPHYT_RS23745 and BPHYT_RS23750 are separated by 202 nucleotidesBPHYT_RS23750 and BPHYT_RS23755 are separated by 125 nucleotidesBPHYT_RS23755 and BPHYT_RS23760 overlap by 23 nucleotides BPHYT_RS23740: BPHYT_RS23740 - AraC family transcriptional regulator, at 894,037 to 894,792 _RS23740 BPHYT_RS23745: BPHYT_RS23745 - hypothetical protein, at 895,070 to 895,306 _RS23745 BPHYT_RS23750: BPHYT_RS23750 - phosphonate ABC transporter substrate-binding protein, at 895,509 to 896,597 _RS23750 BPHYT_RS23755: BPHYT_RS23755 - phosphonate ABC transporter ATP-binding protein, at 896,723 to 897,823 _RS23755 BPHYT_RS23760: BPHYT_RS23760 - phosphonate ABC transporter permease, at 897,801 to 898,757 _RS23760
Group Condition BPHYT_RS23740 BPHYT_RS23745 BPHYT_RS23750 BPHYT_RS23755 BPHYT_RS23760
phage 36hr PHYTO2 MOI 1 -1.7 N.D. -1.5 +0.1 -1.2
stress Bacitracin 0.25 mg/ml -3.9 N.D. -0.0 -0.0 +0.1
phage 24hr PHYTO3 MOI 10 -3.0 N.D. -0.2 -0.1 -0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -0.6 N.D. -0.5 -0.5 -1.9
phage 24hr PHYTO7 MOI 1 -0.8 N.D. +0.3 -0.1 -2.6
phage 36hr PHYTO2 MOI 1 -2.4 N.D. -0.1 +0.3 -0.9
pH LB, pH4 -2.5 N.D. -0.0 -0.2 -0.3
stress Lomefloxacin 0.001 mM -2.7 N.D. -0.1 -0.2 -0.0
phage 36hr PHYTO3 MOI 1 -1.6 N.D. -0.2 -0.2 -0.7
phage P. phyto PHYTO2 MOI 1 -1.9 N.D. +0.2 -0.4 -0.4
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -0.4 N.D. -0.0 -0.4 -1.5
phage 36hr PHYTO10 MOI 10 -0.9 N.D. -0.2 -0.2 -1.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.7 N.D. -0.4 -0.4 -0.7
phage 24hr PHYTO1 MOI 10 -1.0 N.D. -0.2 +0.1 -1.1
phage PHYTO3 MOI 0.1 -2.1 N.D. -0.3 +0.1 +0.1
phage 24hr PHYTO MOI 0.1 -0.7 N.D. -0.5 -0.4 -0.6
phage 24hr PHYTO2 MOI 1 -0.8 N.D. -0.4 +0.1 -1.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -1.2 N.D. -0.6 -0.4 +0.0
nophagecontrol 24hr Phyto Lib only -0.6 N.D. +0.3 -0.4 -1.4
phage 24hr PHYTO3 MOI 1 -0.9 N.D. +0.2 +0.1 -1.3
phage 24hr PHYTO1 MOI 10 -0.5 N.D. +0.3 -0.2 -1.4
carbon source Phenylacetic 5 mM (C) -1.4 N.D. -0.5 -0.2 +0.5
phage 36hr PHYTO8 MOI 10 -2.1 N.D. +0.0 +0.3 +0.2
phage 24hr PHYTO11 MOI 0.1 -1.3 N.D. -0.5 -0.1 +0.9
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -1.1 N.D. -0.3 +0.2 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days +0.2 N.D. +0.3 +0.3 -1.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 N.D. -0.4 -0.3 -0.7
carbon source Suberic (C) -0.4 N.D. -0.6 +0.2 +0.9
phage P. phyto PHYTO2 MOI 1 -0.8 N.D. +0.1 +0.4 +1.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.8 N.D. -0.0 +0.1 +1.3
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