Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS23545 and BPHYT_RS23550 overlap by 4 nucleotidesBPHYT_RS23550 and BPHYT_RS23555 are separated by 15 nucleotidesBPHYT_RS23555 and BPHYT_RS23560 are separated by 424 nucleotidesBPHYT_RS23560 and BPHYT_RS23565 are separated by 33 nucleotides BPHYT_RS23545: BPHYT_RS23545 - nodulation protein, at 849,238 to 852,558 _RS23545 BPHYT_RS23550: BPHYT_RS23550 - multidrug transporter, at 852,555 to 855,680 _RS23550 BPHYT_RS23555: BPHYT_RS23555 - multidrug transporter, at 855,696 to 856,925 _RS23555 BPHYT_RS23560: BPHYT_RS23560 - hypothetical protein, at 857,350 to 857,571 _RS23560 BPHYT_RS23565: BPHYT_RS23565 - ABC transporter, at 857,605 to 859,398 _RS23565
Group Condition BPHYT_RS23545 BPHYT_RS23550 BPHYT_RS23555 BPHYT_RS23560 BPHYT_RS23565
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.0 +0.1 -0.3 N.D. -0.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.4 +0.1 -0.7 N.D. +0.0
phage 36hr PHYTO8 MOI 0.1 -0.3 -0.2 -0.7 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 -0.3 +0.1 N.D. -0.7
phage 24hr PHYTO MOI 0.1 -0.1 -0.1 -0.6 N.D. +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.0 -0.2 +0.5 N.D. -0.8
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.3 +0.5 +0.0 N.D. -0.5
phage 36hr PHYTO10 MOI 10 -0.3 +0.4 -0.4 N.D. +0.4
phage P. phyto PHYTO2 MOI 1 -0.4 -0.0 -0.3 N.D. +0.7
nitrogen source L-Isoleucine (N) -0.2 +0.7 +0.1 N.D. -0.3
vitamin With vitamins t2 +0.1 +0.1 -0.6 N.D. +0.7
phage 36hr PHYTO2 MOI 1 +0.1 +0.7 -0.8 N.D. +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.3 +0.4 -0.4 N.D. +0.5
phage 24hr PHYTO6 MOI 10 -0.3 +0.3 -0.2 N.D. +1.0
phage 24hr PHYTO1 MOI 10 -0.1 +0.5 -0.3 N.D. +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.1 -0.2 -0.2 N.D. +0.2
vitamin No vitamins t2 -0.0 +0.1 -0.2 N.D. +1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +0.6 -0.3 N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 -0.1 +0.3 N.D. +0.7
phage 24hr PHYTO6 MOI 1 -0.0 +0.4 +0.2 N.D. +0.6
motility outer cut, LB soft agar motility assay +0.1 +0.2 +0.6 N.D. +0.4
phage P. phyto PHYTO2 MOI 1 +0.6 +0.0 +0.7 N.D. +0.1
phage 24hr PHYTO3 MOI 10 +0.4 +0.6 +0.5 N.D. -0.0
carbon source Suberic (C) +0.3 +0.4 +0.5 N.D. +0.2
carbon source Protocatechuic Acid (C) +0.4 +0.1 +0.6 N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.4 +0.6 N.D. +0.2
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.2 +1.1 N.D. +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +0.2 +0.4 N.D. +0.6
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.2 +0.8 N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +0.4 +0.2 N.D. +1.2
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