Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS23460 and BPHYT_RS23465 are separated by 213 nucleotidesBPHYT_RS23465 and BPHYT_RS23470 are separated by 89 nucleotidesBPHYT_RS23470 and BPHYT_RS23475 are separated by 72 nucleotidesBPHYT_RS23475 and BPHYT_RS23480 are separated by 339 nucleotides BPHYT_RS23460: BPHYT_RS23460 - AraC family transcriptional regulator, at 831,153 to 832,109 _RS23460 BPHYT_RS23465: BPHYT_RS23465 - aliphatic nitrilase, at 832,323 to 833,309 _RS23465 BPHYT_RS23470: BPHYT_RS23470 - carbonic anhydrase, at 833,399 to 833,953 _RS23470 BPHYT_RS23475: BPHYT_RS23475 - luciferase, at 834,026 to 835,033 _RS23475 BPHYT_RS23480: BPHYT_RS23480 - hypothetical protein, at 835,373 to 835,894 _RS23480
Group Condition BPHYT_RS23460 BPHYT_RS23465 BPHYT_RS23470 BPHYT_RS23475 BPHYT_RS23480
phage 24hr PHYTO3 MOI 10 -3.0 -0.4 N.D. -1.5 -0.9
carbon source Tween 20 (C) -0.8 -1.8 N.D. -1.4 -0.2
phage 24hr PHYTO9 MOI 0.1 -3.6 -0.4 N.D. -0.4 +0.5
phage P. phyto PHYTO2 MOI 1 -3.0 +0.3 N.D. -0.9 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.1 -0.8 N.D. -0.4 -0.6
phage 36hr PHYTO6 MOI 10 -2.4 -0.4 N.D. +0.3 -1.4
phage 36hr PHYTO6 MOI 0.1 -1.1 -0.0 N.D. -2.0 -0.6
phage 24hr PHYTO7 MOI 10 -3.2 -0.4 N.D. +1.3 -1.4
phage 24hr PHYTO3 MOI 0.1 -2.6 +0.2 N.D. -0.9 -0.3
carbon source 2-Deoxy-D-ribonic lithium salt (C) -3.0 -0.7 N.D. +0.6 -0.4
tn7 efficiency Outgrowth after Tn7 transformation -2.6 -0.5 N.D. +0.3 -0.4
phage 24hr PHYTO6 MOI 0.1 -1.1 +0.2 N.D. -2.0 -0.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -3.7 +0.1 N.D. +0.2 +0.3
phage 36hr PHYTO8 MOI 10 -2.5 -0.1 N.D. +0.3 -0.7
phage 36hr PHYTO11 MOI 1 -2.7 +0.3 N.D. +0.7 -1.0
phage P. phyto corn MOI 1 -1.4 +0.8 N.D. -1.3 -0.4
phage 36hr PHYTO4 MOI 1 -2.4 +0.1 N.D. +0.5 -0.4
phage 36hr PHYTO1 MOI 1 -1.2 +0.8 N.D. -0.8 -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.5 -0.1 N.D. -2.1 -1.1
phage 36hr PHYTO3 MOI 0.1 -2.7 -0.1 N.D. +1.0 +0.1
phage 36hr PHYTO9 MOI 1 +1.1 +0.7 N.D. -2.1 -0.9
phage 36hr PHYTO6 MOI 1 +1.1 -0.1 N.D. +0.5 -2.3
phage 24hr PHYTO4 MOI 10 +1.2 +0.4 N.D. -0.2 -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.7 -0.7 N.D. -0.9 -0.1
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +1.1 +0.4 N.D. -1.2 +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.6 -0.0 N.D. +0.8 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.9 +1.2 N.D. -1.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.2 +0.9 N.D. -0.9 +0.9
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 +1.1 N.D. -0.9 +1.3
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +3.2 +0.4 N.D. -0.0 +0.3
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