Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS23370	BPHYT_RS23375	BPHYT_RS23380	BPHYT_RS23385	BPHYT_RS23390
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.7	N.D.	-2.0	-1.0	+0.1
phage	36hr PHYTO2 MOI 1	+0.4	N.D.	-0.2	-2.9	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.9	N.D.	+0.3	-0.5	-0.2
phage	36hr PHYTO11 MOI 1	+0.1	N.D.	+0.1	-2.8	+0.3
phage	24hr PHYTO6 MOI 0.1	+0.3	N.D.	+0.2	-2.8	+0.2
phage	24hr PHYTO3 MOI 0.1	+0.2	N.D.	-0.5	-2.0	+0.2
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+1.6	N.D.	-2.1	-1.3	-0.3
carbon source	Malonic (C)	-1.0	N.D.	-0.4	-0.8	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-1.1	N.D.	-0.2	+0.9	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	N.D.	+0.2	-1.4	-0.2
carbon source	Suberic (C)	+0.8	N.D.	+0.6	-0.9	-1.0
phage	24hr PHYTO3 MOI 10	+0.2	N.D.	+0.8	-2.4	+1.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.6	N.D.	+0.6	-0.8	-0.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+1.2	N.D.	-0.0	-1.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	N.D.	+0.4	-0.3	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.5	N.D.	-0.8	+0.0	-0.3
carbon source	L-Arabinose (C)	+0.7	N.D.	-1.0	+1.1	-0.3
phage	24hr PHYTO7 MOI 10	+0.4	N.D.	-0.4	-0.6	+1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.5	N.D.	-0.8	-0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.1	N.D.	-0.2	-1.1	-0.0
phage	24hr PHYTO4 MOI 10	+0.4	N.D.	-0.0	-0.9	+1.6
supernatant control	Vogels_fungal_media; pH 5.5	+0.7	N.D.	+0.3	+1.3	-1.0
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.4	N.D.	+0.5	-0.5	+1.0
nitrogen source	L-Isoleucine (N)	+0.9	N.D.	+0.2	+0.9	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.9	N.D.	-0.2	-0.6	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.2	N.D.	-0.4	+0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.5	N.D.	-0.6	-0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.8	N.D.	-1.1	+0.0	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.6	N.D.	-0.5	-0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.1	N.D.	-0.1	+0.4	+0.1