Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS23260	BPHYT_RS23265	BPHYT_RS23270	BPHYT_RS23275	BPHYT_RS23280
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-2.1	-1.6	-1.4	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	-1.2	-2.4	-1.1	-0.3
phage	24hr PHYTO6 MOI 1	-0.1	-2.1	-1.6	-1.0	-0.8
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.7	-0.7	-2.1	-1.7	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	-1.5	-2.0	-1.0	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.0	-1.4	-1.2	-1.7	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	-1.8	-2.3	-1.1	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-1.8	-1.1	-1.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	-2.3	-1.0	-0.6	-0.8
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-1.2	-1.3	-1.2	-1.5	+0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.3	-0.7	-3.3	-0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	-2.3	-1.3	-0.9	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	-0.9	-1.8	-1.2	-0.1
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.6	-2.1	-1.0	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.9	-2.0	-1.8	+0.6	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	-2.7	-0.2	-1.0	+0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.7	-0.4	-3.1	-0.3	+0.3
motility	inner cut, LB soft agar motility assay	+0.4	-0.3	-2.1	-1.2	-1.1
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.8	-1.4	-0.9	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-1.1	-2.7	-0.7	+0.2
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.4	-2.1	-1.0	+0.2
phage	36hr PHYTO1 MOI 10	-0.0	-2.1	+0.7	-2.4	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.7	-1.1	-1.5	-0.7	+0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.9	-1.5	-1.0	-0.4	+0.4
phage	24hr PHYTO10 MOI 10	-0.1	-0.7	+0.8	-2.3	-1.0
phage	P. phyto PHYTO2 MOI 0.1	+0.4	-1.0	-2.1	-0.8	+0.7
phage	24hr PHYTO7 MOI 10	-0.5	+0.7	-0.8	+0.5	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.8	-0.9	-1.6	+0.6	+1.1
phage	24hr PHYTO8 MOI 1	+0.6	-0.9	-0.6	-1.9	+1.2
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+1.3	+1.2	+1.0	+0.9	-0.3