Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS23205	BPHYT_RS23210	BPHYT_RS23215	BPHYT_RS23220	BPHYT_RS23225
phage	36hr PHYTO10 MOI 10	-0.7	-2.3	-0.2	-0.1	-0.8
phage	24hr PHYTO6 MOI 10	-2.3	-0.8	+0.1	-0.6	-0.2
carbon source	Protocatechuic Acid (C)	-0.9	-0.4	-0.7	+0.0	-1.9
phage	24hr PHYTO6 MOI 1	-0.7	-1.1	+0.2	+0.4	-2.5
phage	24hr PHYTO8 MOI 1	-1.1	-0.1	-0.1	-0.5	-1.8
carbon source	Xylitol (C)	-0.6	-1.6	+0.3	-0.6	-0.9
phage	36hr PHYTO8 MOI 10	-0.7	-0.1	+0.3	-0.9	-1.8
phage	36hr PHYTO2 MOI 1	-0.8	-1.4	+0.2	-0.7	-0.2
nophagecontrol	36hr Phyto Lib only	-1.2	+0.2	-0.1	-0.8	-0.9
carbon source	Gly-Glu (C)	-0.6	-1.5	+0.1	-0.5	-0.3
stress	A22 0.005 mg/ml	-0.8	-1.1	+0.0	+0.1	-0.8
phage	24hr PHYTO3 MOI 0.1	+0.4	-0.3	-0.1	-0.7	-1.4
motility	inner cut, LB soft agar motility assay	-0.6	-0.5	+0.4	-0.4	-1.0
phage	24hr PHYTO3 MOI 10	-0.4	-1.4	-0.1	+0.4	-0.5
carbon source	Phenylacetic 5 mM (C)	+0.0	-0.9	+0.4	+0.1	-1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.4	-0.7	-0.3	+0.2	+0.7
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.7	+0.1	-0.2	+0.9	-1.3
nitrogen source	L-Isoleucine (N)	-0.1	-0.5	+0.6	+0.6	-1.8
phage	36hr PHYTO1 MOI 1	+0.1	-0.9	+0.4	-0.8	+0.5
phage	24hr PHYTO9 MOI 0.1	+0.1	-0.4	+0.5	-1.3	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.3	-1.0	+0.1	-0.5	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.3	-0.2	-0.7	+1.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.1	+1.1	+0.6	-0.6	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.3	-0.1	+0.9	+0.0	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.3	-0.2	-0.3	+1.6
carbon source	Malonic (C)	-0.5	+0.4	+0.3	+0.6	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.7	-0.5	-0.1	+1.6
motility	outer cut, LB soft agar motility assay	+1.1	+1.2	+0.0	-0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	+0.3	-0.0	-0.2	+1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.7	+0.4	+1.1	+0.1	-0.5