Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS23145 and BPHYT_RS23150 are separated by 212 nucleotidesBPHYT_RS23150 and BPHYT_RS23155 are separated by 73 nucleotidesBPHYT_RS23155 and BPHYT_RS23160 are separated by 28 nucleotidesBPHYT_RS23160 and BPHYT_RS23165 are separated by 32 nucleotides BPHYT_RS23145: BPHYT_RS23145 - putrescine/spermidine ABC transporter ATP-binding protein, at 758,061 to 759,224 _RS23145 BPHYT_RS23150: BPHYT_RS23150 - ABC transporter substrate-binding protein, at 759,437 to 760,558 _RS23150 BPHYT_RS23155: BPHYT_RS23155 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data), at 760,632 to 762,080 _RS23155 BPHYT_RS23160: BPHYT_RS23160 - Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data), at 762,109 to 763,443 _RS23160 BPHYT_RS23165: BPHYT_RS23165 - glutamine amidotransferase, at 763,476 to 764,270 _RS23165
Group Condition BPHYT_RS23145 BPHYT_RS23150 BPHYT_RS23155 BPHYT_RS23160 BPHYT_RS23165
carbon source Putrescine (C) N.D. N.D. -5.2 -4.0 N.D.
nitrogen source Putrescine (N) N.D. N.D. -4.7 -3.7 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. N.D. -1.1 -1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -2.5 +0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -2.2 +0.1 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.9 -1.2 N.D.
phage 36hr PHYTO1 MOI 1 N.D. N.D. -1.9 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.5 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -1.4 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -1.3 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -0.8 -0.8 N.D.
nitrogen source L-Isoleucine (N) N.D. N.D. -0.4 -1.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. N.D. -1.9 +0.6 N.D.
supernatant control Vogels_fungal_media 0.1X N.D. N.D. -1.7 +0.4 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.3 -1.4 N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.2 +0.4 N.D.
carbon source D-Glucose (C) N.D. N.D. +1.1 -0.5 N.D.
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent N.D. N.D. +1.4 -0.4 N.D.
stress Zinc 0.5 mM N.D. N.D. +1.3 -0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +1.9 -0.5 N.D.
phage 24hr PHYTO2 MOI 0.1 N.D. N.D. +1.0 +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. +0.2 +1.3 N.D.
carbon source Malonic (C) N.D. N.D. +0.9 +0.7 N.D.
phage 24hr PHYTO6 MOI 10 N.D. N.D. +1.5 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +1.5 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. +1.5 +0.2 N.D.
phage 36hr PHYTO4 MOI 1 N.D. N.D. +1.3 +0.5 N.D.
nophagecontrol 24hr Phyto Lib Only N.D. N.D. +1.6 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. +2.1 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. +1.0 +1.1 N.D.
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