Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS23085 and BPHYT_RS23090 are separated by 33 nucleotidesBPHYT_RS23090 and BPHYT_RS23095 are separated by 37 nucleotidesBPHYT_RS23095 and BPHYT_RS23100 are separated by 26 nucleotidesBPHYT_RS23100 and BPHYT_RS23105 are separated by 81 nucleotides BPHYT_RS23085: BPHYT_RS23085 - MFS transporter, at 743,089 to 744,501 _RS23085 BPHYT_RS23090: BPHYT_RS23090 - histidine kinase, at 744,535 to 745,089 _RS23090 BPHYT_RS23095: BPHYT_RS23095 - MFS transporter, at 745,127 to 746,359 _RS23095 BPHYT_RS23100: BPHYT_RS23100 - sugar ABC transporter substrate-binding protein, at 746,386 to 747,333 _RS23100 BPHYT_RS23105: BPHYT_RS23105 - DNA polymerase, at 747,415 to 749,790 _RS23105
Group Condition BPHYT_RS23085 BPHYT_RS23090 BPHYT_RS23095 BPHYT_RS23100 BPHYT_RS23105
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.1 -2.4 +0.2 -1.8 -0.2
phage 36hr PHYTO7 MOI 1 -0.6 -0.1 -0.0 -2.7 -0.3
phage 36hr PHYTO4 MOI 1 -0.0 -3.3 +0.3 -0.4 -0.2
phage 36hr PHYTO8 MOI 10 +0.2 -2.5 -0.5 -0.7 +0.2
carbon source Phenylacetic 5 mM (C) -0.7 -0.7 -0.4 -1.4 +0.0
phage 36hr PHYTO10 MOI 10 -0.2 -0.6 +0.0 -2.3 +0.2
phage P. phyto PHYTO2 MOI 1 +0.6 -2.6 +0.1 -1.0 -0.0
phage 36hr PHYTO3 MOI 1 -0.5 -0.9 +0.1 -1.7 +0.3
phage 36hr PHYTO11 MOI 1 +0.0 -0.6 +0.1 -2.1 -0.0
phage 36hr PHYTO10 MOI 10 +0.1 -1.1 -0.3 -1.4 +0.1
phage 36hr PHYTO4 MOI 0.1 -0.5 -0.9 -0.5 -0.7 +0.0
phage 36hr PHYTO3 MOI 1 -0.1 -0.9 +0.2 -1.5 -0.2
nophagecontrol 36hr Phyto Lib only -0.1 -0.5 +0.0 -2.1 +0.3
phage 36hr PHYTO2 MOI 1 +0.6 -1.1 -0.4 -0.6 -0.3
phage 36hr PHYTO11 MOI 1 -0.4 -1.8 +0.2 +0.3 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 -1.9 +0.0 -0.1 -0.1
phage 24hr PHYTO9 MOI 10 +0.2 +0.0 +0.2 -2.1 +0.0
phage 36hr PHYTO10 MOI 1 +0.4 -1.2 -0.1 -0.7 -0.0
phage 24hr PHYTO3 MOI 10 +0.0 -1.7 +0.5 -0.4 +0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.6 -1.6 -0.1 +0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 -1.1 +0.6 -0.6 -0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.2 -2.0 +0.2 +0.6 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.0 -1.4 -0.1 +0.8 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 -0.5 -0.2 +1.3 -0.4
carbon source Sebacic (C) +0.7 -1.0 +0.4 -0.3 +0.1
nitrogen source D-Alanine (N) -0.4 +1.2 -0.3 -0.7 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +1.0 -0.1 -0.7 +0.0
nophagecontrol 36hr Phyto Lib only +0.0 -0.6 +0.5 +0.8 +0.5
supernatant control Vogels_fungal_media; pH 5.5 -0.5 +0.5 +0.5 +0.7 +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.4 +0.8 +0.1 +1.2 -0.0
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