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Protein
Homologs
Fitness for 5 genes in
Burkholderia phytofirmans PsJN
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BPHYT_RS23060 and BPHYT_RS23065 are separated by 122 nucleotides
BPHYT_RS23065 and BPHYT_RS23070 are separated by 40 nucleotides
BPHYT_RS23070 and BPHYT_RS23075 are separated by 162 nucleotides
BPHYT_RS23075 and BPHYT_RS23080 are separated by 225 nucleotides
BPHYT_RS23060: BPHYT_RS23060 - 3-isopropylmalate dehydratase large subunit, at 734,683 to 736,650
_RS23060
BPHYT_RS23065: BPHYT_RS23065 - MFS transporter, at 736,773 to 738,239
_RS23065
BPHYT_RS23070: BPHYT_RS23070 - hypothetical protein, at 738,280 to 740,211
_RS23070
BPHYT_RS23075: BPHYT_RS23075 - GntR family transcriptional regulator, at 740,374 to 741,030
_RS23075
BPHYT_RS23080: BPHYT_RS23080 - gamma-glutamyltransferase, at 741,256 to 743,040
_RS23080
Group
Condition
BPHYT
_RS23060
BPHYT
_RS23065
BPHYT
_RS23070
BPHYT
_RS23075
BPHYT
_RS23080
nophagecontrol
24hr Phyto Lib Only
-0.4
-0.3
-0.4
-1.3
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.7
+0.3
-0.3
-0.6
-0.4
phage
36hr PHYTO9 MOI 1
-0.8
+0.3
+0.2
-1.2
-0.1
phage
24hr PHYTO4 MOI 10
-0.2
+0.2
-0.4
-1.5
+0.3
phage
24hr PHYTO3 MOI 10
-0.3
+0.4
-0.4
-0.7
-0.7
phage
24hr PHYTO MOI 0.1
-0.5
+0.3
-0.6
-1.0
+0.2
phage
24hr PHYTO11 MOI 1
-0.5
+0.4
-0.6
-0.7
-0.2
phage
P. phyto PHYTO2 MOI 1
-0.8
+0.6
+0.0
-1.2
-0.1
phage
36hr PHYTO2 MOI 1
+0.4
+0.0
-0.4
-1.2
-0.3
phage
36hr PHYTO2 MOI 1
-0.7
+0.5
-0.4
-0.5
-0.3
phage
36hr PHYTO6 MOI 0.1
+0.3
-0.5
-0.4
-0.9
+0.2
phage
36hr PHYTO11 MOI 0.1
+0.3
+0.6
-0.5
-1.2
-0.5
phage
24hr PHYTO3 MOI 1
+0.0
+0.9
-0.5
-1.2
-0.4
phage
24hr PHYTO4 MOI 0.1
+0.0
+0.2
-0.9
-0.8
+0.5
phage
24hr PHYTO1 MOI 1
-0.2
-0.1
-0.5
-0.8
+0.7
phage
36hr PHYTO7 MOI 0.1
-0.3
+0.8
-0.0
-1.0
-0.3
phage
36hr PHYTO1 MOI 10
+0.4
+0.2
-0.5
-1.0
+0.2
phage
24hr PHYTO6 MOI 1
-0.2
+0.5
-0.4
-0.8
+0.4
phage
36hr PHYTO3 MOI 1
-0.7
+0.7
-0.1
-0.7
+0.4
phage
36hr PHYTO11 MOI 0.1
+0.4
+0.6
-0.4
-0.8
-0.1
phage
24hr PHYTO10 MOI 1
-0.5
+0.9
+0.1
-0.6
-0.2
phage
36hr PHYTO10 MOI 10
-0.2
+0.9
-0.2
-1.1
+0.5
phage
24hr PHYTO6 MOI 10
-0.8
+1.1
+0.1
-0.6
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-1.2
+0.9
-0.0
+0.6
-0.2
phage
24hr PHYTO11 MOI 0.1
+0.3
+0.4
+0.0
-0.8
+0.6
in planta
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
-0.2
-0.2
+1.1
-0.6
+0.5
in planta
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
+0.9
-0.5
+0.3
+0.4
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.3
+0.3
-0.1
+1.7
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
-0.0
+0.9
+1.0
+0.4
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.1
+0.6
+0.1
+3.6
+0.4
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