Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS23035 and BPHYT_RS23040 are separated by 26 nucleotidesBPHYT_RS23040 and BPHYT_RS23045 are separated by 252 nucleotidesBPHYT_RS23045 and BPHYT_RS23050 are separated by 131 nucleotidesBPHYT_RS23050 and BPHYT_RS23055 are separated by 272 nucleotides BPHYT_RS23035: BPHYT_RS23035 - hypothetical protein, at 728,842 to 729,639 _RS23035 BPHYT_RS23040: BPHYT_RS23040 - peptidase, at 729,666 to 731,936 _RS23040 BPHYT_RS23045: BPHYT_RS23045 - AsnC family transcriptional regulator, at 732,189 to 732,854 _RS23045 BPHYT_RS23050: BPHYT_RS23050 - hypothetical protein, at 732,986 to 733,306 _RS23050 BPHYT_RS23055: BPHYT_RS23055 - LysR family transcriptional regulator, at 733,579 to 734,481 _RS23055
Group Condition BPHYT_RS23035 BPHYT_RS23040 BPHYT_RS23045 BPHYT_RS23050 BPHYT_RS23055
phage 36hr PHYTO7 MOI 1 -3.4 -0.2 N.D. N.D. N.D.
phage P. phyto PHYTO2 MOI 1 -2.5 -0.4 N.D. N.D. N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) -2.7 +0.1 N.D. N.D. N.D.
phage 36hr PHYTO10 MOI 10 -1.8 -0.2 N.D. N.D. N.D.
phage 36hr PHYTO3 MOI 1 -1.6 -0.3 N.D. N.D. N.D.
carbon source Phenylacetic 5 mM (C) -1.3 -0.4 N.D. N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.5 -0.1 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.6 +0.1 N.D. N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.0 -0.5 N.D. N.D. N.D.
phage 36hr PHYTO11 MOI 1 -1.0 -0.4 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.2 -0.1 N.D. N.D. N.D.
phage 36hr PHYTO2 MOI 1 -1.1 -0.2 N.D. N.D. N.D.
nitrogen source L-Glutamic (N) -1.0 -0.2 N.D. N.D. N.D.
phage 24hr PHYTO2 MOI 0.1 -0.9 -0.3 N.D. N.D. N.D.
phage P. phyto corn MOI 0.1 -0.8 -0.4 N.D. N.D. N.D.
phage 24hr PHYTO10 MOI 1 -1.1 -0.1 N.D. N.D. N.D.
carbon source D-Glucose (C) -0.8 -0.4 N.D. N.D. N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.9 -0.3 N.D. N.D. N.D.
carbon source Protocatechuic Acid (C) -1.4 +0.3 N.D. N.D. N.D.
carbon source D-Glucose 20 mM (C) -1.2 +0.2 N.D. N.D. N.D.
carbon source D-Glucose 20 mM (C) -1.2 +0.1 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 +0.3 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 +0.5 N.D. N.D. N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.9 -0.2 N.D. N.D. N.D.
phage 24hr PHYTO11 MOI 0.1 +1.2 -0.4 N.D. N.D. N.D.
phage 36hr PHYTO2 MOI 0.1 +1.1 -0.2 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.1 -0.1 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +0.0 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.4 -0.1 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.2 +0.2 N.D. N.D. N.D.
remove
BPHYT_RS23035
plot		 remove
BPHYT_RS23040
plot		 remove
BPHYT_RS23045		 remove
BPHYT_RS23050
plot		 remove
BPHYT_RS23055
plot