Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS22905	BPHYT_RS22910	BPHYT_RS22915	BPHYT_RS22920	BPHYT_RS22925
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.3	-4.8	-0.5	-0.1	-0.3
carbon source	adipate (C)	+0.0	-3.5	-0.1	+0.2	-0.7
phage	24hr PHYTO3 MOI 10	+0.1	-2.3	-0.8	+0.2	-1.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-3.4	-0.3	-0.2	-0.1
nophagecontrol	24hr Phyto Lib Only	+0.4	-2.0	-1.6	-0.5	-0.2
phage	PHYTO3 MOI 0.1	-0.2	-2.5	-0.6	-0.4	+0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-1.4	-0.6	-0.2	-1.2
phage	24hr PHYTO2 MOI 1	-0.3	-2.1	-1.0	-0.1	+0.2
phage	24hr PHYTO2 MOI 0.1	+0.2	-2.0	-1.2	-0.5	+0.2
nitrogen source	L-Lysine (N)	-0.1	-2.2	-0.6	-0.2	-0.2
phage	24hr PHYTO3 MOI 10	-0.0	-2.2	-0.9	-0.2	+0.2
phage	36hr PHYTO2 MOI 1	-0.3	-1.9	-0.3	+0.0	-0.6
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.1	-3.4	-0.1	+0.1	+0.3
phage	24hr PHYTO6 MOI 0.1	+0.2	-2.0	-0.9	-0.2	-0.1
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.6	-2.1	+0.1	-0.4	+0.1
phage	24hr PHYTO6 MOI 10	-0.3	-1.8	-0.6	-0.6	+0.3
phage	24hr PHYTO3 MOI 1	+0.2	-2.0	-0.6	-0.3	-0.0
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.3	-3.0	-0.1	+0.2	-0.1
phage	36hr PHYTO7 MOI 0.1	-0.1	-2.1	+0.5	-0.1	-0.6
phage	36hr PHYTO4 MOI 1	+0.5	-1.7	-0.9	-0.2	-0.0
nophagecontrol	36hr Phyto Lib Only	+0.4	-1.8	-0.4	-0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.5	-1.0	-0.4	-0.8
phage	24hr PHYTO9 MOI 10	+0.1	-1.4	-1.1	-0.2	+0.4
phage	36hr PHYTO3 MOI 1	+0.6	-2.0	-0.1	-0.4	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-2.0	+0.7	-0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-2.2	+0.5	-0.0	-0.2
phage	24hr PHYTO1 MOI 10	+0.5	-1.9	+0.4	-0.4	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.9	-1.5	+0.6	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	-0.3	-1.1	-0.4	+1.5
carbon source	Suberic (C)	+0.7	+1.4	-0.6	+0.3	-0.3