Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS22855	BPHYT_RS22860	BPHYT_RS22865	BPHYT_RS22870	BPHYT_RS22875
phage	P. phyto PHYTO2 MOI 1	-4.0	-4.9	-1.0	-3.6	+0.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.1	+0.2	-5.5	-0.8	-0.7
nitrogen source	L-Lysine (N)	-0.2	-2.0	-1.1	-1.2	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	-1.7	-0.5	-1.5	-0.2
phage	24hr PHYTO3 MOI 10	-0.7	-2.8	-0.2	-0.6	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.8	+0.5	-2.6	-0.3
phage	24hr PHYTO3 MOI 10	-1.0	-0.6	-1.3	-0.8	+0.3
phage	P. phyto PHYTO2 MOI 0.1	-0.1	-1.4	+0.9	-2.3	-0.5
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+1.0	+0.1	-4.5	+0.3	-0.0
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.6	+2.0	-3.8	-0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-2.2	+0.1	+0.4	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	-1.1	+0.5	-0.7	-0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-1.4	-2.1	+1.3	-0.2
nitrogen source	L-Serine (N)	-0.5	-2.4	-0.2	+0.5	+0.2
phage	24hr PHYTO9 MOI 10	-0.6	-0.4	-2.3	+0.7	+0.1
vitamin	No vitamins t1	+0.2	-1.9	-0.1	-1.2	+0.5
carbon source	Phenylacetic 5 mM (C)	-1.2	-1.3	+0.6	-0.6	+0.1
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.2	+0.3	-2.6	-0.4	+0.2
carbon source	Suberic (C)	+0.7	-1.0	-0.7	-1.2	+0.4
phage	P. phyto corn MOI 1	-0.4	+0.5	+0.7	-2.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.5	+0.4	+0.6	-1.1	+0.4
nophagecontrol	36hr Phyto Lib Only	-0.6	+0.6	-1.9	+0.6	+0.2
phage	24hr PHYTO6 MOI 10	-0.8	+0.8	+0.4	-1.6	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.4	+1.4	-1.9	+0.4	-0.8
nitrogen source	L-Glutamic (N)	-0.9	+1.2	-0.3	+0.6	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.7	+0.9	+0.4	-2.4	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-1.1	+0.9	+0.6	+0.8	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.1	+1.3	-0.4	+1.0	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+2.3	-1.3	+0.9	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.7	+2.4	+1.1	+0.3	+0.4