Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS22850	BPHYT_RS22855	BPHYT_RS22860	BPHYT_RS22865	BPHYT_RS22870
phage	P. phyto PHYTO2 MOI 1	+0.2	-4.0	-4.9	-1.0	-3.6
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.4	-0.1	+0.2	-5.5	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	-0.9	-1.7	-0.5	-1.5
phage	24hr PHYTO3 MOI 10	-0.8	-1.0	-0.6	-1.3	-0.8
nitrogen source	L-Lysine (N)	+0.3	-0.2	-2.0	-1.1	-1.2
phage	24hr PHYTO3 MOI 10	+0.1	-0.7	-2.8	-0.2	-0.6
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.2	+1.0	+0.1	-4.5	+0.3
phage	P. phyto PHYTO2 MOI 0.1	-0.4	-0.1	-1.4	+0.9	-2.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.4	-0.8	+0.5	-2.6
phage	24hr PHYTO9 MOI 10	-0.2	-0.6	-0.4	-2.3	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.8	-0.5	-1.6	+0.7	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.4	-1.4	-2.1	+1.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.4	-0.6	+2.0	-3.8	-0.5
vitamin	No vitamins t1	+0.5	+0.2	-1.9	-0.1	-1.2
carbon source	Phenylacetic 5 mM (C)	+0.2	-1.2	-1.3	+0.6	-0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	+0.7	+0.2	-1.7	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	-1.5	+0.4	+0.6	-1.1
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.5	+0.2	+0.3	-2.6	-0.4
nophagecontrol	36hr Phyto Lib Only	-0.4	-0.6	+0.6	-1.9	+0.6
phage	24hr PHYTO6 MOI 10	-0.4	-0.8	+0.8	+0.4	-1.6
phage	36hr PHYTO3 MOI 1	-0.5	-1.6	+0.8	-0.7	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.1	-0.6	-2.2	+0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.9	-0.8	-1.1	+0.5	-0.7
phage	P. phyto corn MOI 1	+0.6	-0.4	+0.5	+0.7	-2.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	+0.7	+0.9	+0.4	-2.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.2	+0.4	+1.4	-1.9	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-1.1	+1.3	-0.4	+1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.1	+2.3	-1.3	+0.9
phage	36hr PHYTO10 MOI 10	-1.0	+0.2	+1.4	+0.6	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	-0.7	+2.4	+1.1	+0.3