Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS22700 and BPHYT_RS22705 are separated by 131 nucleotidesBPHYT_RS22705 and BPHYT_RS22710 overlap by 1 nucleotidesBPHYT_RS22710 and BPHYT_RS22715 are separated by 442 nucleotidesBPHYT_RS22715 and BPHYT_RS22720 are separated by 178 nucleotides BPHYT_RS22700: BPHYT_RS22700 - FAD-dependent oxidoreductase, at 648,156 to 649,436 _RS22700 BPHYT_RS22705: BPHYT_RS22705 - hypothetical protein, at 649,568 to 650,350 _RS22705 BPHYT_RS22710: BPHYT_RS22710 - XRE family transcriptional regulator, at 650,350 to 650,919 _RS22710 BPHYT_RS22715: BPHYT_RS22715 - L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) (from data), at 651,362 to 652,294 _RS22715 BPHYT_RS22720: BPHYT_RS22720 - LysR family transcriptional regulator, at 652,473 to 653,456 _RS22720
Group Condition BPHYT_RS22700 BPHYT_RS22705 BPHYT_RS22710 BPHYT_RS22715 BPHYT_RS22720
carbon source L-Arabinose (C) +0.1 N.D. -0.7 -2.5 -3.1
phage P. phyto PHYTO2 MOI 1 +0.2 N.D. -0.6 -2.3 -0.1
phage 24hr PHYTO3 MOI 10 +0.4 N.D. -0.2 -0.5 -1.7
phage 36hr PHYTO2 MOI 1 -0.4 N.D. -0.5 -0.7 -0.4
phage 24hr PHYTO7 MOI 1 -0.0 N.D. -0.8 -1.1 -0.1
carbon source Suberic (C) +0.1 N.D. -0.8 -0.0 -1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 N.D. +0.0 -1.1 -0.7
phage 24hr PHYTO10 MOI 10 +0.0 N.D. -1.3 +0.3 -0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 N.D. +0.1 -0.7 -0.9
phage 24hr PHYTO10 MOI 10 +0.1 N.D. -1.1 -0.2 -0.4
phage 24hr PHYTO3 MOI 1 +0.1 N.D. -0.7 +0.1 -0.9
phage 36hr PHYTO1 MOI 10 +0.0 N.D. -0.5 +0.4 -1.2
phage 36hr PHYTO9 MOI 0.1 +0.1 N.D. -0.6 +0.7 -1.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.3 N.D. -0.8 +0.5 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 N.D. -0.3 -0.8 -0.4
phage 36hr PHYTO2 MOI 1 -0.0 N.D. -1.1 +0.7 -0.7
lb LB -0.1 N.D. -0.6 -0.9 +0.4
phage 24hr PHYTO6 MOI 0.1 +0.1 N.D. -0.9 +0.4 -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 N.D. +0.0 -0.6 -0.8
phage 24hr PHYTO2 MOI 0.1 -0.0 N.D. -1.3 +0.3 +0.1
phage 24hr PHYTO8 MOI 1 +0.3 N.D. +0.2 -0.6 -0.7
carbon source Phenylacetic 5 mM (C) -0.0 N.D. +0.8 -0.5 -0.9
phage 36hr PHYTO11 MOI 0.1 +0.1 N.D. -0.2 +0.6 -1.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.0 N.D. -0.7 +0.7 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 N.D. +0.5 -0.0 -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.0 N.D. +0.8 +0.2 -0.9
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.1 N.D. +1.2 +0.3 -0.5
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 N.D. +0.1 +1.4 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 N.D. +0.2 +1.7 -0.3
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.0 N.D. +1.4 +1.1 -0.2
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