Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS22670 and BPHYT_RS22675 are separated by 190 nucleotidesBPHYT_RS22675 and BPHYT_RS22680 are separated by 318 nucleotidesBPHYT_RS22680 and BPHYT_RS22685 overlap by 4 nucleotidesBPHYT_RS22685 and BPHYT_RS22690 are separated by 49 nucleotides BPHYT_RS22670: BPHYT_RS22670 - hypothetical protein, at 641,778 to 642,110 _RS22670 BPHYT_RS22675: BPHYT_RS22675 - 4-hydroxyphenylpyruvate dioxygenase, at 642,301 to 644,184 _RS22675 BPHYT_RS22680: BPHYT_RS22680 - 3-dehydroquinate dehydratase, at 644,503 to 644,958 _RS22680 BPHYT_RS22685: BPHYT_RS22685 - shikimate 5-dehydrogenase, at 644,955 to 645,869 _RS22685 BPHYT_RS22690: BPHYT_RS22690 - D-galactonate transporter, at 645,919 to 647,295 _RS22690
Group Condition BPHYT_RS22670 BPHYT_RS22675 BPHYT_RS22680 BPHYT_RS22685 BPHYT_RS22690
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. -0.3 -0.8 -0.6 -0.2
phage 24hr PHYTO11 MOI 1 N.D. -0.2 -0.4 -0.9 -0.4
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. +0.1 -0.8 -0.8 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.1 -0.4 -0.9 -0.1
carbon source D-Glucose (C) N.D. -0.2 -0.3 -0.7 -0.0
nitrogen source Ammonium chloride (N) N.D. -0.2 -0.3 -0.7 -0.0
carbon source Malonic (C) N.D. -0.3 -0.2 -0.7 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +0.1 -0.2 -0.8 -0.2
phage P. phyto PHYTO2 MOI 1 N.D. +0.1 -0.3 -0.6 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. -0.5 +0.4 -0.7 -0.1
phage 36hr PHYTO2 MOI 0.1 N.D. +0.3 -0.6 -0.3 -0.2
supernatant control Vogels_fungal_media 0.1X N.D. -0.7 +0.3 +0.0 -0.2
phage 36hr PHYTO8 MOI 10 N.D. +0.3 +0.3 -1.1 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. -0.1 +0.5 -0.5 -0.1
phage 36hr PHYTO11 MOI 0.1 N.D. +0.5 -0.6 -0.1 -0.0
phage 24hr PHYTO4 MOI 10 N.D. +0.6 -0.1 -0.3 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.2 +0.4 -0.7 +0.2
carbon source Tween 20 (C) N.D. +0.4 -0.7 +0.3 +0.1
phage 36hr PHYTO4 MOI 1 N.D. +0.3 +0.4 -0.5 +0.0
nitrogen source L-Glutamic (N) N.D. -0.4 +0.8 +0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.1 -0.2 +0.8 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.2 -0.3 +0.8 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.2 -0.0 +0.8 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.1 -0.4 +1.2 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.3 +0.5 -0.3 -0.0
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. +0.4 +0.1 +0.9 -0.4
nophagecontrol 24hr Phyto Lib Only N.D. +0.7 +0.4 +0.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.6 +0.2 +0.5 -0.1
phage 24hr PHYTO7 MOI 1 N.D. +0.3 +0.7 +0.0 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.5 +0.3 +0.7 -0.0
remove
BPHYT_RS22670
plot		 remove
BPHYT_RS22675
plot		 remove
BPHYT_RS22680		 remove
BPHYT_RS22685
plot		 remove
BPHYT_RS22690
plot