Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS22630	BPHYT_RS22635	BPHYT_RS22640	BPHYT_RS22645	BPHYT_RS22650
supernatant control	Vogels_fungal_media 0.1X	-0.5	-0.7	-0.2	-0.4	-0.7
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.1	+0.5	-1.7	-0.2	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.0	-0.1	-1.1	-0.1	-0.3
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.2	-0.5	+0.4	-0.9	-0.2
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.3	-0.4	-0.2	-0.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.2	-0.1	-0.7	+0.6	-0.9
supernatant control	Vogels_fungal_media; pH 5.5	-0.7	-0.5	+1.0	-0.0	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.3	+0.3	+0.3	-0.4	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+0.4	-0.9	+0.4	-0.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.5	+0.1	-1.0	-0.5	+0.4
vitamin	With vitamins t2	+0.6	-0.2	-0.5	+0.0	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.3	+0.4	-0.7	-0.2	-0.3
nitrogen source	L-Glutamic (N)	-0.6	+0.5	-0.1	-0.3	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.3	-0.4	+0.7	-0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.2	+0.6	-0.9	+0.1	+0.0
phage	24hr PHYTO6 MOI 10	+0.6	-0.0	+0.5	-0.7	-0.2
carbon source	Sebacic (C)	+0.7	-0.8	+0.5	+0.0	-0.1
carbon source	Suberic (C)	+0.8	-0.2	+0.4	-0.6	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.2	-0.2	+0.7	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.0	-0.4	+1.3	-0.0	-0.2
phage	P. phyto PHYTO2 MOI 1	-0.2	-0.2	+0.5	+0.6	+0.1
phage	24hr PHYTO3 MOI 10	+0.1	+0.3	+0.5	+0.5	-0.3
carbon source	D-Glucose (C)	+0.6	-0.5	+0.2	+0.5	+0.4
carbon source	Dodecandioic (C)	+0.7	-0.4	+0.5	+0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.2	-0.3	+0.8	-0.0
temperature	LB, 37C	+0.6	+0.5	-0.0	+0.4	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.5	+0.5	+0.4	-0.1
carbon source	Protocatechuic Acid (C)	+0.9	-0.2	+0.9	+0.1	+0.1
carbon source	D-Glucose (C)	+0.6	-0.1	+0.6	+0.5	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.7	+0.7	+0.3	+0.3