Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS22620	BPHYT_RS22625	BPHYT_RS22630	BPHYT_RS22635	BPHYT_RS22640
supernatant control	Vogels_fungal_media 0.1X	-0.2	-0.5	-0.5	-0.7	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.4	-0.1	-0.0	-0.1	-1.1
nitrogen source	D-Alanine (N)	-0.4	+0.2	-0.6	+0.0	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.3	-0.4	-0.5	-0.2	+0.2
nitrogen source	L-Serine (N)	-0.4	-0.2	-0.7	+0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6	-0.2	-0.6	-0.2	-0.3
vitamin	With vitamins t2	-0.4	-0.1	+0.6	-0.2	-0.5
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.4	+0.3	-0.1	+0.5	-1.7
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.0	-0.2	+0.5	+0.1	-1.0
supernatant control	Vogels_fungal_media; pH 5.5	-0.2	-0.1	-0.7	-0.5	+1.0
nitrogen source	L-Asparagine (N)	-0.6	+0.2	-0.3	+0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.3	+0.2	-0.2	+0.4	-0.9
phage	24hr PHYTO2 MOI 1	-0.4	-0.3	-0.2	+0.4	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.0	-0.2	-0.3	-0.4	+0.7
nitrogen source	L-Glutamic (N)	+0.2	+0.2	-0.6	+0.5	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.3	-0.0	+0.3	+0.4	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.3	+0.1	+0.2	+0.6	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.5	-0.1	+0.0	+0.7	-0.7
carbon source	Suberic (C)	-0.3	-0.2	+0.8	-0.2	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.1	-0.4	+0.0	-0.4	+1.3
carbon source	Sebacic (C)	+0.2	+0.0	+0.7	-0.8	+0.5
temperature	LB, 37C	-0.3	-0.2	+0.6	+0.5	-0.0
carbon source	Dodecandioic (C)	-0.1	-0.1	+0.7	-0.4	+0.5
phage	24hr PHYTO6 MOI 10	+0.2	-0.3	+0.6	-0.0	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.0	+0.3	+0.5	+0.5
carbon source	Protocatechuic Acid (C)	-0.1	-0.0	+0.9	-0.2	+0.9
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.2	+0.1	+0.3	+0.4	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.1	+0.2	+0.2	+0.9
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.6	-0.0	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.1	+0.4	+0.7	+0.7