Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS22550 and BPHYT_RS22555 are separated by 138 nucleotidesBPHYT_RS22555 and BPHYT_RS22560 are separated by 14 nucleotidesBPHYT_RS22560 and BPHYT_RS22565 are separated by 533 nucleotidesBPHYT_RS22565 and BPHYT_RS22570 are separated by 170 nucleotides BPHYT_RS22550: BPHYT_RS22550 - manganese transporter, at 620,596 to 621,924 _RS22550 BPHYT_RS22555: BPHYT_RS22555 - transcriptional regulator, at 622,063 to 622,632 _RS22555 BPHYT_RS22560: BPHYT_RS22560 - flagellar transcriptional regulator FlhD, at 622,647 to 622,967 _RS22560 BPHYT_RS22565: BPHYT_RS22565 - membrane protein, at 623,501 to 624,724 _RS22565 BPHYT_RS22570: BPHYT_RS22570 - acetyltransferase, at 624,895 to 625,434 _RS22570
Group Condition BPHYT_RS22550 BPHYT_RS22555 BPHYT_RS22560 BPHYT_RS22565 BPHYT_RS22570
motility outer cut, LB soft agar motility assay -0.1 -0.9 -1.8 -0.2 -0.2
motility inner cut, LB soft agar motility assay -0.3 -0.9 -1.2 -0.1 -0.1
motility outer cut, LB soft agar motility assay -0.4 -1.2 -0.8 -0.1 -0.2
motility outer cut, LB soft agar motility assay -0.0 -1.3 -0.5 -0.4 -0.3
motility inner cut, LB soft agar motility assay -0.3 -0.9 -0.6 -0.2 -0.1
motility inner cut, LB soft agar motility assay -0.2 -0.9 -0.3 -0.2 -0.3
stress Bacitracin 0.25 mg/ml -0.2 -1.4 +0.4 -0.1 -0.1
phage 36hr PHYTO4 MOI 1 -0.1 -0.7 +0.3 -0.3 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -1.2 +0.2 -0.2 +0.4
phage 24hr PHYTO4 MOI 10 +0.1 -0.7 +0.8 -0.3 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 -0.2 +0.8 -0.5 +0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.4 +0.5 +0.7 +0.1 -0.2
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.4 +0.5 +0.6 +0.3 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.1 +0.7 +0.9 +0.2 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 +0.6 +0.9 +0.3 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.4 +1.1 +0.3 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.5 +1.0 +0.3 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.4 +0.9 +0.9 +0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +0.4 +1.7 +0.2 -0.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.6 -0.3 +1.5 +0.3 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.4 +1.4 +0.2 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.2 +1.3 +0.4 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.3 +1.2 +0.4 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.5 +1.1 +0.2 +0.5
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.9 +1.2 +0.1 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.2 +1.2 +0.5 +0.5
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.9 +1.3 -0.0 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.5 +1.3 +0.6 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.4 +1.5 +0.5 +0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 +0.9 +1.6 +0.3 +0.3
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BPHYT_RS22550
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BPHYT_RS22555
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BPHYT_RS22565
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BPHYT_RS22570
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