Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS22495	BPHYT_RS22500	BPHYT_RS22505	BPHYT_RS22510	BPHYT_RS22515
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	N.D.	-4.6	-1.8	-2.6	-1.6
stress	Benzethonium chloride 0.0016 mM	N.D.	-2.2	-1.1	-3.2	-2.5
stress	A22 0.005 mg/ml	N.D.	-0.7	-4.0	-2.2	-1.7
phage	24hr PHYTO11 MOI 1	N.D.	-2.7	-0.4	-0.2	-0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	-1.3	-1.6	-0.1	-0.2
carbon source	Protocatechuic Acid (C)	N.D.	-1.7	-0.2	-0.2	-0.1
stress	Lomefloxacin 0.001 mM	N.D.	-0.9	-0.4	-0.2	-0.7
phage	36hr PHYTO1 MOI 10	N.D.	-1.4	-0.2	-0.5	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-1.2	-1.3	+0.0	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-2.0	+0.0	-0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-1.7	+0.2	-1.0	+0.5
phage	24hr PHYTO4 MOI 0.1	N.D.	-0.9	-0.1	-1.3	+0.2
phage	36hr PHYTO10 MOI 1	N.D.	-1.4	-0.1	-0.6	+0.1
motility	inner cut, LB soft agar motility assay	N.D.	+0.2	-1.2	-0.4	-0.4
phage	24hr PHYTO8 MOI 1	N.D.	-1.2	+0.3	-0.8	-0.1
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	N.D.	-1.5	-0.3	+0.4	-0.1
temperature	LB, 37C	N.D.	-0.4	-1.3	-0.1	+0.4
phage	24hr PHYTO10 MOI 10	N.D.	-1.2	+0.6	-0.5	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.8	-0.6	-0.4	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-1.5	+0.6	+0.0	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	+0.5	+0.2	-0.5	-1.1
carbon source	Tween 20 (C)	N.D.	-0.9	+0.6	-0.6	+0.0
carbon source	Protocatechuic Acid (C)	N.D.	-1.2	+0.6	+0.3	-0.1
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	+0.8	-0.2	-0.9	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	+0.6	+1.2	-0.6	+0.0
phage	36hr PHYTO9 MOI 0.1	N.D.	+0.8	-0.5	+0.7	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+1.4	-0.0	-0.3	+0.3
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	+1.6	+0.7	-0.3	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.5	+1.2	+1.0	+0.6
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+1.0	+0.7	+0.7	-0.1