Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS22465	BPHYT_RS22470	BPHYT_RS22475	BPHYT_RS22480	BPHYT_RS22485
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.3	-3.4	+0.1	+0.0	-1.5
supernatant control	Vogels_fungal_media; pH 5.5	+0.1	-2.0	+0.0	-0.1	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.1	-1.9	+0.2	-0.6	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.4	-0.7	-0.7	-0.7	+0.7
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.1	-2.5	+0.4	+0.2	+0.1
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.1	-1.8	+0.1	+0.4	-0.1
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.6	-1.3	+0.2	+0.2	+0.0
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.6	-1.0	+0.1	+0.5	-0.2
phage	P. phyto corn MOI 1	-0.1	-1.9	+0.2	+0.5	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-1.0	+0.4	-0.3	+0.2
nitrogen source	Ammonium chloride (N)	+0.1	+0.6	+0.1	-0.5	-1.3
carbon source	Sebacic (C)	+0.6	-0.1	+0.1	-0.1	-1.4
nutrient	Min media with glucose	-0.3	-1.1	-0.1	+0.3	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.2	-1.7	+0.3	+0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.7	-0.4	-0.3	+0.2	+1.1
nitrogen source	L-Lysine (N)	-0.3	+0.7	+0.2	-1.0	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1	+0.7	+0.1	+0.5	-0.0
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.7	-1.6	-0.1	+0.0	+1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+0.7	+0.3	-0.1	-0.7
phage	24hr PHYTO2 MOI 0.1	+0.4	-0.9	+0.3	+0.1	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+1.8	-0.0	-0.4	-0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.5	+0.3	+0.7	+0.4
carbon source	D-Glucosamine Hydrochloride (C)	-0.1	+0.4	-0.0	-0.5	+1.6
carbon source	Suberic (C)	+1.2	+0.3	-0.1	+0.5	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.5	+0.8	-0.1	+0.1	+0.9
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.6	+0.4	+0.3	+0.5	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+1.2	+0.2	-0.2	+0.9
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+2.4	-0.0	+0.4	+0.4
temperature	LB 37C	+0.5	-0.2	+0.1	+2.6	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.7	+1.5	+0.3	+0.2	+0.6