Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS22415	BPHYT_RS22420	BPHYT_RS22425	BPHYT_RS22430	BPHYT_RS22435
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-4.1	-0.5	+0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.0	-3.9	-0.1	+0.0	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-1.7	+0.1	-1.9	+0.2	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	-2.2	-0.2	+0.0	+0.1
nutrient	Min media with glucose	-0.0	-1.9	-0.3	-0.0	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.2	-1.7	-0.4	+0.0	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.3	-2.9	+0.3	+0.4	-0.2
carbon source	Putrescine (C)	+0.1	+0.3	-0.4	-0.3	-1.7
nitrogen source	L-Glutamic (N)	-0.2	-1.9	-0.4	+0.1	+0.5
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.2	-2.2	+0.2	+0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-1.2	-0.4	+0.3	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.0	-1.7	+0.2	+0.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-1.5	-0.1	+0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-0.9	-0.2	-0.2	+0.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.0	-1.8	+0.4	+0.2	+0.2
nitrogen source	L-Phenylalanine (N)	+0.2	-1.3	+0.5	-0.1	+0.1
carbon source	D,L-Lactate (C)	+0.2	-1.1	-0.3	+0.2	+0.5
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.7	-1.5	+0.4	-0.0	+0.0
supernatant control	Vogels_fungal_media; pH 5.5	-0.6	+0.6	+0.5	-0.0	-0.5
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.0	+1.2	-0.7	+0.2	-0.2
carbon source	Protocatechuic Acid (C)	-0.1	+1.6	-0.2	+0.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	+0.6	+0.6	+0.7	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.8	-0.7	+0.2	+1.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.3	+0.8	+1.0	-0.0	+0.2
phage	P. phyto PHYTO2 MOI 1	-0.1	+0.4	+1.1	+0.3	+0.2
carbon source	Azelaic (C)	+0.1	+1.4	+0.7	+0.1	-0.4
carbon source	Protocatechuic Acid (C)	+0.3	+1.3	+0.4	+0.1	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+1.6	+0.0	+0.1	+0.5
carbon source	Sebacic (C)	+0.2	+1.6	+0.3	+0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+2.0	+0.2	+0.2	+0.2