Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS22370	BPHYT_RS22375	BPHYT_RS22380	BPHYT_RS22385	BPHYT_RS22390
nitrogen source	Carnitine Hydrochloride (N)	+0.2	-3.9	-3.3	-3.5	-3.2
phage	36hr PHYTO1 MOI 1	-1.0	-0.1	-0.2	-0.1	+0.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.6	-0.1	-0.7	-0.6	+0.0
phage	24hr PHYTO6 MOI 10	+0.3	-0.4	-0.4	-0.3	+0.4
phage	24hr PHYTO6 MOI 0.1	-0.3	-0.2	-0.5	+0.1	+0.4
phage	24hr PHYTO2 MOI 1	-0.5	-0.3	-0.1	+0.4	+0.3
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.8	+0.0	-0.1	+0.4	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.5	+0.5	-0.2	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+0.3	+0.1	-0.4	-0.3
phage	P. phyto PHYTO2 MOI 1	-0.7	-0.0	+0.5	+0.6	+0.1
phage	PHYTO3 MOI 0.1	-0.5	-0.2	+0.3	+0.4	+0.4
motility	outer cut, LB soft agar motility assay	-0.2	+0.1	-0.4	+0.3	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	+0.3	-0.3	+0.0	+0.5
motility	outer cut, LB soft agar motility assay	+0.8	-0.3	-0.1	+0.1	+0.4
nitrogen source	L-Isoleucine (N)	+0.7	-0.0	-0.0	-0.3	+0.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.5	-0.1	+0.6	+0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	+0.2	+0.5	+0.3	+0.4
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.0	+0.4	+0.2	+0.3	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	+0.7	+0.6	-0.4	+0.7
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.2	-0.0	+0.6	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+0.1	+0.0	+0.3	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.4	+0.2	+0.2	+0.6
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.2	+0.6	-0.0	+0.6	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.3	-0.0	+0.4	+0.4	+0.4
r2a control	R2A control	+0.1	+0.5	+0.5	+0.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.1	+0.4	+0.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	+0.2	+0.5	-0.0	+1.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.0	+0.2	+0.7	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.4	+0.2	+0.5	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.3	+0.2	+0.6	+0.4