Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS22235 and BPHYT_RS22240 are separated by 256 nucleotidesBPHYT_RS22240 and BPHYT_RS22245 overlap by 4 nucleotidesBPHYT_RS22245 and BPHYT_RS22250 are separated by 74 nucleotidesBPHYT_RS22250 and BPHYT_RS22255 are separated by 5 nucleotides BPHYT_RS22235: BPHYT_RS22235 - sensor histidine kinase, at 546,243 to 547,658 _RS22235 BPHYT_RS22240: BPHYT_RS22240 - hypothetical protein, at 547,915 to 548,112 _RS22240 BPHYT_RS22245: BPHYT_RS22245 - transporter for D-alanine, D-lactate, and pyruvate (MctP) (from data), at 548,109 to 549,590 _RS22245 BPHYT_RS22250: BPHYT_RS22250 - D-amino acid dehydrogenase, at 549,665 to 550,909 _RS22250 BPHYT_RS22255: BPHYT_RS22255 - hypothetical protein, at 550,915 to 551,259 _RS22255
Group Condition BPHYT_RS22235 BPHYT_RS22240 BPHYT_RS22245 BPHYT_RS22250 BPHYT_RS22255
carbon source pyruvate (C) -1.6 -1.8 -1.7 -0.0 +0.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -1.8 -1.8 -1.5 +0.6 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.1 -1.1 -1.1 +0.2 +0.1
carbon source D-Lactate (C) -0.4 -0.8 -1.0 -0.5 -0.0
phage 24hr PHYTO1 MOI 10 -0.4 -0.2 -0.1 +0.1 -1.9
phage 24hr PHYTO3 MOI 10 -0.3 -0.2 -0.3 -0.4 -1.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.0 -0.9 -1.3 +0.8 +0.1
phage 36hr PHYTO10 MOI 1 +0.2 -0.0 -0.1 -0.1 -2.0
carbon source D,L-Lactate (C) -0.6 -0.7 -0.7 +0.3 -0.1
phage 36hr PHYTO2 MOI 1 +0.3 -1.0 -0.4 +0.2 -1.1
nitrogen source D-Alanine (N) -0.7 -0.8 -0.6 +0.2 +0.1
phage 36hr PHYTO2 MOI 0.1 +0.3 -0.1 -0.4 +0.1 -1.6
carbon source D-Alanine (C) -0.4 -1.1 -1.3 +0.8 +0.4
phage 36hr PHYTO10 MOI 10 +0.4 -0.2 -0.2 +0.1 -1.7
phage 24hr PHYTO2 MOI 0.1 +0.4 -0.6 -0.3 +0.2 -1.3
phage 36hr PHYTO10 MOI 10 +0.4 -0.9 -0.1 +0.2 -1.0
phage P. phyto PHYTO2 MOI 0.1 -0.2 -0.6 -0.0 +0.6 -1.3
phage 36hr PHYTO3 MOI 1 -0.1 -0.9 -0.1 +0.5 -0.8
carbon source L-Alanine (C) -0.3 -1.0 -0.8 +0.3 +0.5
phage 24hr PHYTO3 MOI 0.1 +0.1 -0.3 -0.4 +0.5 -1.1
phage 36hr PHYTO4 MOI 1 +0.5 -0.1 -0.3 +0.3 -1.6
phage 24hr PHYTO3 MOI 1 +0.5 -0.5 -0.3 +0.3 -1.3
phage 36hr PHYTO3 MOI 1 +0.5 -0.4 -0.3 +0.1 -1.0
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.6 -0.6 -0.3 +0.8 -0.3
phage 36hr PHYTO8 MOI 0.1 +0.4 +0.4 +0.1 +0.2 -1.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -0.4 -0.5 +1.0 -0.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.5 +0.7 +0.0 +0.9 -0.6
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.5 +0.5 +0.8 -0.3 -0.5
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 -0.4 -0.2 +0.5 +0.8
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.3 -0.1 +1.9 +0.4
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