Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS22205 and BPHYT_RS22210 overlap by 7 nucleotidesBPHYT_RS22210 and BPHYT_RS22215 overlap by 4 nucleotidesBPHYT_RS22215 and BPHYT_RS22220 are separated by 7 nucleotidesBPHYT_RS22220 and BPHYT_RS22225 are separated by 158 nucleotides BPHYT_RS22205: BPHYT_RS22205 - hypothetical protein, at 540,002 to 540,958 _RS22205 BPHYT_RS22210: BPHYT_RS22210 - metal ABC transporter substrate-binding protein, at 540,952 to 541,746 _RS22210 BPHYT_RS22215: BPHYT_RS22215 - hypothetical protein, at 541,743 to 542,828 _RS22215 BPHYT_RS22220: BPHYT_RS22220 - sulfatase, at 542,836 to 544,782 _RS22220 BPHYT_RS22225: BPHYT_RS22225 - hypothetical protein, at 544,941 to 545,489 _RS22225
Group Condition BPHYT_RS22205 BPHYT_RS22210 BPHYT_RS22215 BPHYT_RS22220 BPHYT_RS22225
phage P. phyto PHYTO2 MOI 1 -0.9 N.D. -2.0 -0.1 -0.4
phage 24hr PHYTO3 MOI 10 -2.8 N.D. -0.5 +0.0 -0.0
phage 36hr PHYTO6 MOI 10 -0.7 N.D. -1.7 -0.2 -0.6
temperature LB, 37C -2.5 N.D. -0.2 +0.1 -0.6
phage 36hr PHYTO8 MOI 10 -1.3 N.D. -0.9 -0.1 -0.5
phage 36hr PHYTO3 MOI 1 -1.4 N.D. -1.6 +0.2 +0.0
phage 36hr PHYTO2 MOI 1 -1.5 N.D. -0.1 -0.4 -0.1
phage 36hr PHYTO8 MOI 0.1 -0.4 N.D. -1.1 +0.1 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 N.D. -1.5 +0.1 +0.2
phage 24hr PHYTO3 MOI 0.1 -0.9 N.D. +0.1 -0.3 -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.1 N.D. -0.1 -0.2 +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 N.D. +1.0 -0.4 -1.0
phage 24hr PHYTO2 MOI 1 -1.0 N.D. +0.3 +0.2 -0.5
r2a control R2A control -1.5 N.D. +0.4 -0.2 +0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.9 N.D. +0.6 +0.1 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.4 N.D. -0.3 +0.0 +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.8 N.D. -0.6 +0.1 +0.7
carbon source Phenylacetic 5 mM (C) +0.3 N.D. +0.6 -0.5 -1.0
phage 36hr PHYTO6 MOI 0.1 -0.6 N.D. -0.8 +0.2 +0.8
phage 24hr PHYTO4 MOI 0.1 -1.1 N.D. +0.7 +0.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.2 N.D. +0.5 +0.1 +0.4
nitrogen source Carnitine Hydrochloride (N) +0.8 N.D. -1.0 +0.0 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 N.D. +0.7 -0.1 +0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 N.D. +1.4 -0.2 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.8 N.D. -0.4 +0.3 +0.8
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.0 N.D. +2.0 -0.1 -0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +1.0 N.D. +0.5 -0.1 +0.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 N.D. -0.2 +0.4 +2.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.4 N.D. +2.1 +0.0 -0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. +2.9 +0.1 +0.2
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