Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS22180 and BPHYT_RS22185 are separated by 56 nucleotidesBPHYT_RS22185 and BPHYT_RS22190 are separated by 603 nucleotidesBPHYT_RS22190 and BPHYT_RS22195 are separated by 22 nucleotidesBPHYT_RS22195 and BPHYT_RS22200 are separated by 146 nucleotides BPHYT_RS22180: BPHYT_RS22180 - hypothetical protein, at 536,031 to 536,270 _RS22180 BPHYT_RS22185: BPHYT_RS22185 - hypothetical protein, at 536,327 to 536,617 _RS22185 BPHYT_RS22190: BPHYT_RS22190 - nucleoid-structuring protein H-NS, at 537,221 to 538,072 _RS22190 BPHYT_RS22195: BPHYT_RS22195 - hypothetical protein, at 538,095 to 538,580 _RS22195 BPHYT_RS22200: BPHYT_RS22200 - cardiolipin synthetase, at 538,727 to 539,989 _RS22200
Group Condition BPHYT_RS22180 BPHYT_RS22185 BPHYT_RS22190 BPHYT_RS22195 BPHYT_RS22200
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 N.D. -2.9 -0.7 -0.6
pH LB, pH4 -0.7 N.D. -3.6 +0.0 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. -1.3 -0.4 -1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. -2.5 -0.2 -0.6
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.3 N.D. -4.7 -0.5 +2.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. -1.8 -0.4 -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.3 N.D. -2.4 +0.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. -1.6 -0.6 -0.6
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 N.D. -1.2 -0.4 -1.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 N.D. -3.1 +0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.1 N.D. -3.1 +0.1 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 N.D. -3.5 +0.3 +0.5
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. -1.7 +0.1 -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. -1.9 -0.2 -0.5
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. -2.9 +0.6 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days +0.2 N.D. -2.3 +0.1 -0.1
pH LB, pH4 -0.1 N.D. -2.1 +0.1 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 N.D. -2.7 +0.4 +0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.1 N.D. -2.6 +0.3 +0.8
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.7 N.D. -1.3 +0.4 -0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.6 N.D. -1.7 +0.2 +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.4 N.D. -1.7 +0.3 +0.4
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +1.1 N.D. +0.6 -0.2 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 N.D. -0.9 +1.0 -0.0
supernatant control Vogels_fungal_media 0.1X +0.4 N.D. -0.8 +0.5 +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 N.D. +1.3 +0.3 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 N.D. +1.1 -0.1 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.3 N.D. -0.7 +0.4 +0.0
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.9 N.D. -1.0 +0.8 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.9 N.D. +1.5 +0.4 -1.3
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