Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS22085	BPHYT_RS22090	BPHYT_RS22095	BPHYT_RS22100	BPHYT_RS22105
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.3	-0.0	-0.9	-1.1	+0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.2	-1.1	-0.3	+0.2
phage	36hr PHYTO1 MOI 1	-0.4	-0.1	-0.2	-1.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	-0.2	+0.2	-0.1	-0.6
carbon source	Phenylacetic 5 mM (C)	+0.1	+0.1	-0.7	-0.1	-0.8
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.1	-1.3	+0.4	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.1	-0.1	-1.3	+0.3	-0.3
nitrogen source	L-Serine (N)	-0.3	+0.5	+0.0	-0.9	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.7	+0.2	-0.6	-0.2	+0.2
phage	36hr PHYTO4 MOI 1	-0.4	+0.2	+0.2	-1.4	+0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.1	-0.1	-1.1	+0.6	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.1	-1.0	+0.2	-0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.2	-1.0	+0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.3	+0.2	-1.1	-0.2	+0.2
vitamin	With vitamins t2	+0.3	-0.2	-0.3	-0.7	+0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.3	-0.1	-0.4	-1.0	+0.9
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.1	-1.3	+0.4	+0.6
carbon source	Sebacic (C)	+0.4	+0.2	-0.4	-0.8	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.3	+0.2	-0.9	+0.3	+0.5
phage	P. phyto PHYTO2 MOI 1	+0.3	-0.0	+0.5	-1.6	+0.7
carbon source	D-Glucose (C)	+0.4	+0.4	-0.3	-0.8	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.9	+0.0	-0.4	-0.4	-0.1
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.2	+0.2	-0.7	+0.3	+0.5
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.5	-0.2	-0.7	+0.5	+0.1
phage	P. phyto corn MOI 0.1	+0.1	+0.0	-0.2	-0.5	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.0	+0.8	-0.5	+0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.6	-0.2	+0.6	-0.1
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.5	+0.3	-0.0	+0.6	-0.4
carbon source	Dodecandioic (C)	+0.3	+0.3	-0.2	+0.3	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	+0.5	+0.1	+1.3	+0.2