Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS22030 and BPHYT_RS22035 overlap by 4 nucleotidesBPHYT_RS22035 and BPHYT_RS22040 are separated by 1 nucleotidesBPHYT_RS22040 and BPHYT_RS22045 are separated by 3 nucleotidesBPHYT_RS22045 and BPHYT_RS22050 are separated by 17 nucleotides BPHYT_RS22030: BPHYT_RS22030 - peptide ABC transporter ATP-binding protein, at 497,961 to 498,986 _RS22030 BPHYT_RS22035: BPHYT_RS22035 - peptide ABC transporter ATP-binding protein, at 498,983 to 499,981 _RS22035 BPHYT_RS22040: BPHYT_RS22040 - peptide ABC transporter permease, at 499,983 to 500,897 _RS22040 BPHYT_RS22045: BPHYT_RS22045 - peptide ABC transporter permease, at 500,901 to 501,839 _RS22045 BPHYT_RS22050: BPHYT_RS22050 - peptide ABC transporter substrate-binding protein, at 501,857 to 503,473 _RS22050
Group Condition BPHYT_RS22030 BPHYT_RS22035 BPHYT_RS22040 BPHYT_RS22045 BPHYT_RS22050
nitrogen source L-Lysine (N) -0.7 N.D. -0.9 -1.0 -0.2
vitamin With vitamins t1 -0.6 N.D. +0.1 -1.3 -0.4
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -0.4 N.D. -0.8 +0.1 -0.7
phage 24hr PHYTO3 MOI 10 -0.5 N.D. -0.8 +0.2 -0.5
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.8 N.D. +0.3 -0.6 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.0 N.D. +0.3 -0.3 -0.2
phage 36hr PHYTO7 MOI 0.1 -1.0 N.D. -0.3 +0.7 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.7 N.D. +0.8 -0.7 -0.0
phage P. phyto PHYTO2 MOI 1 -0.6 N.D. +0.1 +0.9 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 N.D. -0.0 +1.0 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. -0.3 +0.7 -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 N.D. +0.4 +1.2 -0.1
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +1.4 N.D. -0.2 -0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 N.D. +0.6 +1.1 -0.3
stress Nickel (II) chloride 1 mM -0.5 N.D. +0.3 +0.9 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 N.D. +0.9 -0.3 +0.4
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.2 N.D. -0.4 +0.6 +1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 N.D. +0.7 -0.2 +0.2
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +1.2 N.D. +0.6 +0.0 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.0 N.D. +0.3 +0.7 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.0 N.D. +0.3 +0.6 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 N.D. +0.4 +0.4 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.8 N.D. +0.7 +0.5 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.5 N.D. +0.3 +0.5 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.4 N.D. +0.6 -0.2 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 N.D. +1.2 +0.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +2.0 N.D. +0.4 +0.3 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.5 N.D. +1.1 +0.1 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 N.D. +0.9 +1.2 +0.0
supernatant control Vogels_fungal_media; pH 5.5 +1.0 N.D. +0.7 +1.2 +0.3
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