Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS21630 and BPHYT_RS21635 are separated by 203 nucleotidesBPHYT_RS21635 and BPHYT_RS21640 are separated by 41 nucleotidesBPHYT_RS21640 and BPHYT_RS21645 are separated by 119 nucleotidesBPHYT_RS21645 and BPHYT_RS21650 are separated by 31 nucleotides BPHYT_RS21630: BPHYT_RS21630 - NmrA family transcriptional regulator, at 408,334 to 409,197 _RS21630 BPHYT_RS21635: BPHYT_RS21635 - extradiol dioxygenase, at 409,401 to 409,805 _RS21635 BPHYT_RS21640: BPHYT_RS21640 - alpha/beta hydrolase, at 409,847 to 410,698 _RS21640 BPHYT_RS21645: BPHYT_RS21645 - LysR family transcriptional regulator, at 410,818 to 411,645 _RS21645 BPHYT_RS21650: BPHYT_RS21650 - cobalamin synthesis protein P47K, at 411,677 to 412,609 _RS21650
Group Condition BPHYT_RS21630 BPHYT_RS21635 BPHYT_RS21640 BPHYT_RS21645 BPHYT_RS21650
carbon source D-Glucose (C) -0.3 -0.6 N.D. -1.0 -0.6
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.1 -0.1 N.D. -0.7 -0.4
phage 36hr PHYTO11 MOI 1 -0.3 -0.5 N.D. -0.6 -0.8
phage 24hr PHYTO9 MOI 0.1 -0.2 -0.2 N.D. -1.9 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -0.3 N.D. -0.8 -0.7
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.5 +0.2 N.D. -0.3 -1.3
carbon source Azelaic (C) +0.2 -1.6 N.D. -0.1 -0.3
supernatant control Vogels_fungal_media 0.1X -0.6 -0.3 N.D. +0.2 -0.9
r2a control R2A control -0.1 +0.5 N.D. -0.9 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.2 N.D. +0.8 -1.9
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days +0.2 +0.4 N.D. -0.6 -0.9
phage 36hr PHYTO6 MOI 0.1 -0.4 -0.2 N.D. +0.8 -0.7
phage 24hr PHYTO10 MOI 10 -0.5 +0.7 N.D. -1.1 +0.4
carbon source Malonic (C) +0.5 -0.9 N.D. -0.4 +0.5
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.4 +0.7 N.D. +0.6 -1.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.3 N.D. -0.9 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.1 +0.2 N.D. -0.5 -0.6
phage 24hr PHYTO6 MOI 10 +0.4 +0.1 N.D. -0.9 +0.6
phage 36hr PHYTO10 MOI 10 +0.5 -1.0 N.D. +0.8 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 -0.9 N.D. -0.3 +1.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 -0.6 N.D. -0.5 +1.5
phage P. phyto corn MOI 1 +0.6 +0.8 N.D. -1.0 +0.1
carbon source succinate (C) +0.7 +0.0 N.D. -0.4 +1.0
motility inner cut, LB soft agar motility assay +0.7 +0.6 N.D. -0.5 +0.8
nophagecontrol 24hr Phyto Lib Only +0.5 +0.8 N.D. -0.3 +0.6
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.8 +0.5 N.D. +0.9 -0.4
phage 24hr PHYTO7 MOI 1 +0.2 +0.5 N.D. +1.0 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.0 +0.5 N.D. +0.5 +0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.4 +0.4 N.D. +0.1 +1.7
phage 24hr PHYTO9 MOI 10 +0.3 +0.7 N.D. +1.0 +0.7
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