Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS21610 and BPHYT_RS21615 are separated by 117 nucleotidesBPHYT_RS21615 and BPHYT_RS21620 overlap by 4 nucleotidesBPHYT_RS21620 and BPHYT_RS21625 are separated by 117 nucleotidesBPHYT_RS21625 and BPHYT_RS21630 are separated by 184 nucleotides BPHYT_RS21610: BPHYT_RS21610 - DNA-binding protein, at 404,332 to 405,861 _RS21610 BPHYT_RS21615: BPHYT_RS21615 - FMN-dependent NADH-azoreductase, at 405,979 to 406,653 _RS21615 BPHYT_RS21620: BPHYT_RS21620 - GCN5 family acetyltransferase, at 406,650 to 407,117 _RS21620 BPHYT_RS21625: BPHYT_RS21625 - LysR family transcriptional regulator, at 407,235 to 408,149 _RS21625 BPHYT_RS21630: BPHYT_RS21630 - NmrA family transcriptional regulator, at 408,334 to 409,197 _RS21630
Group Condition BPHYT_RS21610 BPHYT_RS21615 BPHYT_RS21620 BPHYT_RS21625 BPHYT_RS21630
phage P. phyto PHYTO2 MOI 1 +0.3 -2.7 -4.6 -1.1 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 -1.1 -0.3 -4.6 -0.2
phage 36hr PHYTO2 MOI 1 +0.3 -1.1 -2.7 -3.1 +0.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.6 -0.4 -0.3 -4.3 -0.1
phage 36hr PHYTO6 MOI 10 +0.0 -0.2 -2.6 -2.8 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.0 -0.9 -0.6 -2.9 -0.5
phage 24hr PHYTO2 MOI 1 -0.1 -0.2 -0.9 -3.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 -0.4 -2.3 -1.9 +0.3
phage 24hr PHYTO4 MOI 0.1 -0.0 +0.0 -1.1 -3.0 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.2 +0.5 -4.4 -0.1
phage 24hr PHYTO6 MOI 1 +0.1 +0.0 -1.3 -3.1 +0.3
phage 36hr PHYTO11 MOI 1 -0.4 -0.0 -0.3 -3.2 +0.0
phage 24hr PHYTO MOI 0.1 -0.3 -0.2 -0.4 -3.1 +0.1
phage 24hr PHYTO6 MOI 0.1 +0.2 -0.9 -1.6 -1.6 +0.1
phage 36hr PHYTO1 MOI 1 -0.1 -1.2 +0.3 -3.1 +0.4
phage 36hr PHYTO2 MOI 1 -0.2 -1.2 -1.4 -1.4 +0.5
nophagecontrol 36hr Phyto Lib Only -0.2 -0.3 -2.6 -0.7 +0.2
phage 36hr PHYTO3 MOI 1 +0.0 -0.9 -1.4 -1.7 +0.5
phage 24hr PHYTO7 MOI 1 -0.2 -1.1 -2.2 -0.1 +0.2
phage 24hr PHYTO3 MOI 10 +0.2 -0.4 -1.5 -1.9 +0.2
phage 24hr PHYTO10 MOI 10 -0.1 -0.0 -0.4 -3.0 +0.4
phage 24hr PHYTO3 MOI 1 +0.2 -1.1 +0.4 -3.1 +0.4
phage 36hr PHYTO4 MOI 1 +0.2 -0.9 -0.2 -2.7 +0.5
nitrogen source L-Phenylalanine (N) -0.3 +0.1 -2.4 -0.9 +0.4
phage 36hr PHYTO8 MOI 0.1 +0.3 -0.2 -0.3 -2.9 +0.2
carbon source Protocatechuic Acid (C) +0.1 -0.2 -0.7 -2.4 +0.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 -0.6 -0.7 -1.5 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 +0.2 -1.4 +1.6 -0.9
phage 24hr PHYTO1 MOI 10 +0.5 -1.1 -0.9 +0.8 +0.6
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +0.7 +1.5 -0.2 +0.9
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